RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 SYDE2Q5VT97 1194 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 ZNF852Q6ZMS4 543 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 FAM220AQ7Z4H9 259 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 EPS8L1Q8TE68 723 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 ESR2Q92731 530 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 AURKBQ96GD4 344 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 CEP170P1Q96L14 293 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 CHCHD6Q9BRQ6 235 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 EPB41L4BQ9H329 900 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 TRIT1Q9H3H1 467 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 TMEM45AQ9NWC5 275 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 UBQLN1Q9UMX0 589 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 PKP3Q9Y446 797 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 UBN2Q6ZU65 1347 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 WASHC1A8K0Z3 465 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 CHEK1O14757 476 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 TXNL1O43396 289 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 AGTP01019 485 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 UGT2B4P06133 528 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 ZNF20P17024 532 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 AXLP30530 894 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 NEDD4P46934 1319 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 IL18Q14116 193 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 TPH2Q8IWU9 490 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 SLC22A8Q8TCC7 542 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 DTD1Q8TEA8 209 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 BSCL2Q96G97 398 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 GMCL1Q96IK5 515 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 C7orf26Q96N11 449 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 ERMAPQ96PL5 475 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 OR5B12Q96R08 314 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 TM9SF3Q9HD45 589 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 CD274Q9NZQ7 290 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 MAN1B1Q9UKM7 699 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 PGRMC1O00264 195 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 IGF2BP3O00425 579 aaKnown RBP eCLIP7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 TP73O15350 636 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 NADKO95544 446 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 H2AFZP0C0S5 128 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 GMPSP49915 693 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 ZYXQ15942 572 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 KCNT1Q5JUK3 1230 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 AKR1C8PQ5T2L2 129 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 TMEM26Q6ZUK4 368 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 UBE2R2Q712K3 238 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 H2AFVQ71UI9 128 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 EXOC3L1Q86VI1 746 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 DHX40Q8IX18 779 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 CDK20Q8IZL9 346 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 ZNF567Q8N184 647 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 MTURNQ8N3F0 131 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 IFI44Q8TCB0 444 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 RELTQ969Z4 430 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 GIMAP5Q96F15 307 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 LRRC46Q96FV0 321 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 AK8Q96MA6 479 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 TRAPPC9Q96Q05 1148 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 HERC2P3Q9BVR0 1158 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 ABCG8Q9H221 673 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 EIF2B4Q9UI10 523 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 GNPTGQ9UJJ9 305 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 ANKRD30BQ9BXX2 1392 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 PDS5AQ29RF7 1337 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 E7ENQ6 273 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 CDC123O75794 336 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 PRKD3O94806 890 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 C9P02748 559 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 MMP10P09238 476 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 CES1P23141 567 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 CDC25CP30307 473 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 HNRNPH1P31943 449 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 GPC1P35052 558 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 RGS4P49798 205 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 GRIK3Q13003 919 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 PNOCQ13519 176 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 STRIP1Q5VSL9 837 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 CYP4V2Q6ZWL3 525 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 KRT28Q7Z3Y7 464 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 KDM1BQ8NB78 822 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 TMEM104Q8NE00 496 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 PLEKHO2Q8TD55 490 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 PEX13Q92968 403 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 TMEM203Q969S6 136 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 LURAP1Q96LR2 239 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 C12orf66Q96MD2 445 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 ZNF578Q96N58 590 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 GCNAQ96QF7 691 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 NLNQ9BYT8 704 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 SEMA6CQ9H3T2 930 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 CRNNQ9UBG3 495 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 GSTK1Q9Y2Q3 226 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 A0A096LPI6 279 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 ZNF850A8MQ14 1090 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 H7C1Q1 480 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 CPA1P15085 419 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 RAB3BP20337 219 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 CYP7A1P22680 504 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 AFF3P51826 1226 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 S100A10P60903 97 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 KRT25Q7Z3Z0 450 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms