RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 TMEM35BQ8NCS4 154 aa16.91■□□□□ 0.3
LSM1-201ENST00000311351 WFIKKN2Q8TEU8 576 aa16.91■□□□□ 0.3
LSM1-201ENST00000311351 CYB5D2Q8WUJ1 264 aa16.91■□□□□ 0.3
LSM1-201ENST00000311351 CYP8B1Q9UNU6 501 aa16.91■□□□□ 0.3
LSM1-201ENST00000311351 NYNRINQ9P2P1 1898 aaKnown RBP16.9■□□□□ 0.3
LSM1-201ENST00000311351 LAMA1P25391 3075 aa16.9■□□□□ 0.3
LSM1-201ENST00000311351 MAP3K13O43283 966 aa16.9■□□□□ 0.3
LSM1-201ENST00000311351 ZNF806P0C7X5 589 aa16.9■□□□□ 0.3
LSM1-201ENST00000311351 ATP1A3P13637 1013 aa16.9■□□□□ 0.3
LSM1-201ENST00000311351 HLA-EP13747 358 aa16.9■□□□□ 0.3
LSM1-201ENST00000311351 PTGER3P43115 390 aa16.9■□□□□ 0.3
LSM1-201ENST00000311351 JAM2P57087 298 aa16.9■□□□□ 0.3
LSM1-201ENST00000311351 SLC6A3Q01959 620 aa16.9■□□□□ 0.3
LSM1-201ENST00000311351 ARID5AQ03989 594 aa16.9■□□□□ 0.3
LSM1-201ENST00000311351 PUM1Q14671 1186 aaKnown RBP eCLIP16.9■□□□□ 0.3
LSM1-201ENST00000311351 ANO6Q4KMQ2 910 aa16.9■□□□□ 0.3
LSM1-201ENST00000311351 AASDHQ4L235 1098 aaPredicted RBP16.9■□□□□ 0.3
LSM1-201ENST00000311351 C2CD6Q53TS8 623 aa16.9■□□□□ 0.3
LSM1-201ENST00000311351 MPP7Q5T2T1 576 aa16.9■□□□□ 0.3
LSM1-201ENST00000311351 CAVIN1Q6NZI2 390 aaKnown RBP16.9■□□□□ 0.3
LSM1-201ENST00000311351 SERPINA13PQ6UXR4 307 aa16.9■□□□□ 0.3
LSM1-201ENST00000311351 CYP2U1Q7Z449 544 aa16.9■□□□□ 0.3
LSM1-201ENST00000311351 LGI2Q8N0V4 545 aa16.9■□□□□ 0.3
LSM1-201ENST00000311351 AHI1Q8N157 1196 aa16.9■□□□□ 0.3
LSM1-201ENST00000311351 CARNMT1Q8N4J0 409 aa16.9■□□□□ 0.3
LSM1-201ENST00000311351 ZNF366Q8N895 744 aa16.9■□□□□ 0.3
LSM1-201ENST00000311351 C12orf50Q8NA57 414 aaPredicted RBP16.9■□□□□ 0.3
LSM1-201ENST00000311351 BTN2A3PQ96KV6 586 aa16.9■□□□□ 0.3
LSM1-201ENST00000311351 MRGPRX1Q96LB2 322 aa16.9■□□□□ 0.3
LSM1-201ENST00000311351 DDX50Q9BQ39 737 aaKnown RBP16.9■□□□□ 0.3
LSM1-201ENST00000311351 ADAM33Q9BZ11 813 aa16.9■□□□□ 0.3
LSM1-201ENST00000311351 MKRN2Q9H000 416 aaKnown RBP16.9■□□□□ 0.3
LSM1-201ENST00000311351 VPS45Q9NRW7 570 aa16.9■□□□□ 0.3
LSM1-201ENST00000311351 NOCTQ9UK39 431 aaKnown RBP16.9■□□□□ 0.3
LSM1-201ENST00000311351 ATXN2Q99700 1313 aaKnown RBP16.9■□□□□ 0.3
LSM1-201ENST00000311351 NCOR2Q9Y618 2525 aa16.89■□□□□ 0.29
LSM1-201ENST00000311351 IGHV1OR15-9A0A0B4J2B8 117 aa16.89■□□□□ 0.29
LSM1-201ENST00000311351 TYW5A2RUC4 315 aaKnown RBP16.89■□□□□ 0.29
LSM1-201ENST00000311351 NPC1O15118 1278 aa16.89■□□□□ 0.29
LSM1-201ENST00000311351 ZBTB24O43167 697 aaPredicted RBP16.89■□□□□ 0.29
LSM1-201ENST00000311351 CAVIN2O95810 425 aa16.89■□□□□ 0.29
LSM1-201ENST00000311351 EPHX1P07099 455 aa16.89■□□□□ 0.29
LSM1-201ENST00000311351 TACR2P21452 398 aa16.89■□□□□ 0.29
LSM1-201ENST00000311351 PI4KAP42356 2102 aa16.89■□□□□ 0.29
LSM1-201ENST00000311351 NOMO3P69849 1222 aa16.89■□□□□ 0.29
LSM1-201ENST00000311351 LMAN2Q12907 356 aa16.89■□□□□ 0.29
LSM1-201ENST00000311351 NME3Q13232 169 aa16.89■□□□□ 0.29
LSM1-201ENST00000311351 FNDC3BQ53EP0 1204 aaKnown RBP16.89■□□□□ 0.29
LSM1-201ENST00000311351 NAA35Q5VZE5 725 aa16.89■□□□□ 0.29
LSM1-201ENST00000311351 MBLAC2Q68D91 279 aa16.89■□□□□ 0.29
LSM1-201ENST00000311351 MMS22LQ6ZRQ5 1243 aa16.89■□□□□ 0.29
LSM1-201ENST00000311351 LPCAT2Q7L5N7 544 aa16.89■□□□□ 0.29
LSM1-201ENST00000311351 APTXQ7Z2E3 356 aaKnown RBP16.89■□□□□ 0.29
LSM1-201ENST00000311351 DGLUCYQ7Z3D6 616 aa16.89■□□□□ 0.29
LSM1-201ENST00000311351 KIAA0907Q7Z7F0 614 aaPredicted RBP16.89■□□□□ 0.29
LSM1-201ENST00000311351 CIR1Q86X95 450 aaPredicted RBP16.89■□□□□ 0.29
LSM1-201ENST00000311351 DEFB119Q8N690 84 aa16.89■□□□□ 0.29
LSM1-201ENST00000311351 ANKRD20A12PQ8NF67 263 aa16.89■□□□□ 0.29
LSM1-201ENST00000311351 NETO1Q8TDF5 533 aa16.89■□□□□ 0.29
LSM1-201ENST00000311351 LMLNQ96KR4 655 aa16.89■□□□□ 0.29
LSM1-201ENST00000311351 PCMTD1Q96MG8 357 aaPredicted RBP16.89■□□□□ 0.29
LSM1-201ENST00000311351 IRX2Q9BZI1 471 aaPredicted RBP16.89■□□□□ 0.29
LSM1-201ENST00000311351 PATE3B3GLJ2 98 aa16.88■□□□□ 0.29
LSM1-201ENST00000311351 TFE3P19532 575 aaPredicted RBP16.88■□□□□ 0.29
LSM1-201ENST00000311351 CDK11BP21127 795 aaKnown RBP16.88■□□□□ 0.29
LSM1-201ENST00000311351 SOX5P35711 763 aa16.88■□□□□ 0.29
LSM1-201ENST00000311351 GGCXP38435 758 aa16.88■□□□□ 0.29
LSM1-201ENST00000311351 ATXN1P54253 815 aaKnown RBP16.88■□□□□ 0.29
LSM1-201ENST00000311351 RNASE9P60153 205 aaKnown RBP16.88■□□□□ 0.29
LSM1-201ENST00000311351 RPL6Q02878 288 aaKnown RBP16.88■□□□□ 0.29
LSM1-201ENST00000311351 UBXN1Q04323 297 aa16.88■□□□□ 0.29
LSM1-201ENST00000311351 CDH18Q13634 790 aa16.88■□□□□ 0.29
LSM1-201ENST00000311351 BYSLQ13895 437 aaKnown RBP16.88■□□□□ 0.29
LSM1-201ENST00000311351 PTPRNQ16849 979 aa16.88■□□□□ 0.29
LSM1-201ENST00000311351 FSCBQ5H9T9 825 aa16.88■□□□□ 0.29
LSM1-201ENST00000311351 FAM102AQ5T9C2 384 aaPredicted RBP16.88■□□□□ 0.29
LSM1-201ENST00000311351 XYLT1Q86Y38 959 aa16.88■□□□□ 0.29
LSM1-201ENST00000311351 ATP6V0D2Q8N8Y2 350 aa16.88■□□□□ 0.29
LSM1-201ENST00000311351 ZNF397Q8NF99 534 aaPredicted RBP16.88■□□□□ 0.29
LSM1-201ENST00000311351 PIGKQ92643 395 aa16.88■□□□□ 0.29
LSM1-201ENST00000311351 RNF34Q969K3 372 aa16.88■□□□□ 0.29
LSM1-201ENST00000311351 SPAG5Q96R06 1193 aa16.88■□□□□ 0.29
LSM1-201ENST00000311351 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.88■□□□□ 0.29
LSM1-201ENST00000311351 INTS6Q9UL03 887 aaKnown RBP16.88■□□□□ 0.29
LSM1-201ENST00000311351 CNOT1A5YKK6 2376 aaKnown RBP16.88■□□□□ 0.29
LSM1-201ENST00000311351 NUMA1Q14980 2115 aa16.87■□□□□ 0.29
LSM1-201ENST00000311351 KCNU1A8MYU2 1149 aa16.87■□□□□ 0.29
LSM1-201ENST00000311351 F5H5T6 163 aa16.87■□□□□ 0.29
LSM1-201ENST00000311351 GOLGA8SH3BPF8 625 aa16.87■□□□□ 0.29
LSM1-201ENST00000311351 M0QYT0 321 aa16.87■□□□□ 0.29
LSM1-201ENST00000311351 TIMM44O43615 452 aa16.87■□□□□ 0.29
LSM1-201ENST00000311351 SYNCRIPO60506 623 aaKnown RBP16.87■□□□□ 0.29
LSM1-201ENST00000311351 FOXD2O60548 495 aaPredicted RBP16.87■□□□□ 0.29
LSM1-201ENST00000311351 ZNF217O75362 1048 aa16.87■□□□□ 0.29
LSM1-201ENST00000311351 LUC7L3O95232 432 aaKnown RBP16.87■□□□□ 0.29
LSM1-201ENST00000311351 LSM8O95777 96 aaKnown RBP16.87■□□□□ 0.29
LSM1-201ENST00000311351 CHRNB2P17787 502 aa16.87■□□□□ 0.29
LSM1-201ENST00000311351 POLR2EP19388 210 aaKnown RBP16.87■□□□□ 0.29
LSM1-201ENST00000311351 ABCB4P21439 1286 aa16.87■□□□□ 0.29
LSM1-201ENST00000311351 CCR1P32246 355 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms