RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 FIG4Q92562 907 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 CCDC154A6NI56 674 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 TMEM114B3SHH9 223 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 F8W810 466 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 CCDC130P13994 396 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 HARS2P49590 506 aaKnown RBP13.13□□□□□ -0.31
COL3A1-201ENST00000304636 DDR2Q16832 855 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 GJC2Q5T442 439 aaPredicted RBP13.13□□□□□ -0.31
COL3A1-201ENST00000304636 KCNT2Q6UVM3 1135 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 STK32CQ86UX6 486 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 ELMO3Q96BJ8 720 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 PIF1Q9H611 641 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 KLHL3Q9UH77 587 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 WBP4O75554 376 aaKnown RBP13.12□□□□□ -0.31
COL3A1-201ENST00000304636 RPL22P35268 128 aaKnown RBP13.12□□□□□ -0.31
COL3A1-201ENST00000304636 FMO1Q01740 532 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 FOLH1Q04609 750 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 POU6F1Q14863 301 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 PGM5Q15124 567 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 PALB2Q86YC2 1186 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 BRSK2Q8IWQ3 736 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 TRPC4APQ8TEL6 797 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 PDGFCQ9NRA1 345 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 UBP1Q9NZI7 540 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 ATXN10Q9UBB4 475 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 SPASTQ9UBP0 616 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 ADAM28Q9UKQ2 775 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 TMCC3Q9ULS5 477 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.12□□□□□ -0.31
COL3A1-201ENST00000304636 AK5Q9Y6K8 562 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 CYP3A7-CYP3A51PA0A087WV96 503 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 A0A087X1B8 175 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 RGSL1A5PLK6 1076 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 PLA2G6O60733 806 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 IFNA14P01570 189 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 IMPDH2P12268 514 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 GLRA2P23416 452 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 CYP3A7P24462 503 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 MAD2L1Q13257 205 aaPredicted RBP13.12□□□□□ -0.31
COL3A1-201ENST00000304636 ACVR2BQ13705 512 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 HIST2H2ACQ16777 129 aaPredicted RBP13.12□□□□□ -0.31
COL3A1-201ENST00000304636 HIST2H2AA3Q6FI13 130 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 ZPBP2Q6X784 338 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 POMKQ9H5K3 350 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 UTP6Q9NYH9 597 aaKnown RBP13.12□□□□□ -0.31
COL3A1-201ENST00000304636 RSL24D1Q9UHA3 163 aaKnown RBP13.12□□□□□ -0.31
COL3A1-201ENST00000304636 SIGLEC16A6NMB1 481 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 ANKRD63C9JTQ0 380 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 HMGCRP04035 888 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 CXCL8P10145 99 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 C4BPBP20851 252 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 CLCN3P51790 818 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 PURAQ00577 322 aaKnown RBP13.12□□□□□ -0.31
COL3A1-201ENST00000304636 EPS8Q12929 822 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 COL9A3Q14050 684 aaPredicted RBP13.12□□□□□ -0.31
COL3A1-201ENST00000304636 NCF4Q15080 339 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 BMT2Q1RMZ1 405 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 C10orf120Q5SQS8 335 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 RP9Q8TA86 221 aaKnown RBP13.12□□□□□ -0.31
COL3A1-201ENST00000304636 SHC3Q92529 594 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 DGCR14Q96DF8 476 aaKnown RBP13.12□□□□□ -0.31
COL3A1-201ENST00000304636 ABHD8Q96I13 439 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 SELENONQ9NZV5 590 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 SESN1Q9Y6P5 492 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 MROH2AA6NES4 1674 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 LINC00854A0A1B0GVQ3 168 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 PSMD12O00232 456 aaPredicted RBP13.12□□□□□ -0.31
COL3A1-201ENST00000304636 MGRN1O60291 552 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 AMPD1P23109 780 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 LRPAP1P30533 357 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 HK2P52789 917 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 NDST1P52848 882 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 LAMTOR4Q0VGL1 99 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 NR6A1Q15406 480 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 PTAR1Q7Z6K3 402 aaPredicted RBP13.12□□□□□ -0.31
COL3A1-201ENST00000304636 ZDHHC13Q8IUH4 622 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 TMEM109Q9BVC6 243 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 CEP41Q9BYV8 373 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 ELP3Q9H9T3 547 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 MID1IP1Q9NPA3 183 aa13.12□□□□□ -0.31
COL3A1-201ENST00000304636 DDX3YO15523 660 aaKnown RBP13.11□□□□□ -0.31
COL3A1-201ENST00000304636 TPH1P17752 444 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 SLC26A2P50443 739 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 ITGADQ13349 1161 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 PGS1Q32NB8 556 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 ZNF618Q5T7W0 954 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 ALG3Q92685 438 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 MBOAT7Q96N66 472 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 RPRD1AQ96P16 312 aaPredicted RBP13.11□□□□□ -0.31
COL3A1-201ENST00000304636 UNKQ9C0B0 810 aaKnown RBP13.11□□□□□ -0.31
COL3A1-201ENST00000304636 C6orf62Q9GZU0 229 aaPredicted RBP13.11□□□□□ -0.31
COL3A1-201ENST00000304636 HSMCR30P0CW71 290 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 UQCRBP14927 111 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 RXRBP28702 533 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 HGSNATQ68CP4 663 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 ARHGAP17Q68EM7 881 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 BNIPLQ7Z465 357 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 TTC7BQ86TV6 843 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 C19orf18Q8NEA5 215 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 ZNF512Q96ME7 567 aaPredicted RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms