RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 HNRNPDLO14979 420 aaKnown RBP6.56□□□□□ -1.36
VPS35-201ENST00000299138 TYROBPO43914 113 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 SHBGP04278 402 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 FAM58BPP0C7Q3 252 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 SPATA31C1P0DKV0 1188 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 SCNN1AP37088 669 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 VBP1P61758 197 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 FMO1Q01740 532 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 ZPBP2Q6X784 338 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 NT5DC4Q86YG4 428 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 SULF1Q8IWU6 871 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 BBS7Q8IWZ6 715 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 PHC3Q8NDX5 983 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 LENG1Q96BZ8 264 aaPredicted RBP6.56□□□□□ -1.36
VPS35-201ENST00000299138 LXNQ9BS40 222 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 TMEM120AQ9BXJ8 343 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 NRBP2Q9NSY0 501 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 A0A0G2JPF8 293 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 METTL21EPA6NDL7 271 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 TTLL13PA6NNM8 815 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 HACD1B0YJ81 288 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 HNRNPCL3B7ZW38 293 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 PSAPP07602 524 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 DHRS4L1P0CG22 281 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 HNRNPCL4P0DMR1 293 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 CASP4P49662 377 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 NCKAP1LP55160 1127 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 EIF3EP60228 445 aaKnown RBP6.56□□□□□ -1.36
VPS35-201ENST00000299138 RNASEH2BQ5TBB1 312 aaKnown RBP6.56□□□□□ -1.36
VPS35-201ENST00000299138 DPY19L2P1Q6NXN4 242 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 IZUMO2Q6UXV1 221 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 MTDHQ86UE4 582 aaKnown RBP6.56□□□□□ -1.36
VPS35-201ENST00000299138 ZBTB8OSQ8IWT0 167 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 KBTBD2Q8IY47 623 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 CCDC36Q8IYA8 594 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 BBS5Q8N3I7 341 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 SLC44A1Q8WWI5 657 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 TBRG4Q969Z0 631 aaKnown RBP eCLIP6.56□□□□□ -1.36
VPS35-201ENST00000299138 SLC7A6OSQ96CW6 309 aaPredicted RBP6.56□□□□□ -1.36
VPS35-201ENST00000299138 MXRA8Q9BRK3 442 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 RCOR3Q9P2K3 495 aaPredicted RBP6.56□□□□□ -1.36
VPS35-201ENST00000299138 AK5Q9Y6K8 562 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 MYH7P12883 1935 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 MYO5AQ9Y4I1 1855 aaKnown RBP6.56□□□□□ -1.36
VPS35-201ENST00000299138 MAST2Q6P0Q8 1798 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 IQCMA0A1B0GVH7 501 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 SAC3D1A6NKF1 404 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 TRPC5OSA6NMA1 111 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 CLIC2O15247 247 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 ANPEPP15144 967 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 NPR2P20594 1047 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 MXD4Q14582 209 aaPredicted RBP6.56□□□□□ -1.36
VPS35-201ENST00000299138 MTERF2Q49AM1 385 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 OLFML2AQ68BL7 652 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 HMBOX1Q6NT76 420 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 PSTKQ8IV42 348 aaKnown RBP6.56□□□□□ -1.36
VPS35-201ENST00000299138 ASB12Q8WXK4 309 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 C9orf72Q96LT7 481 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 TUBGCP5Q96RT8 1024 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 TMEM117Q9H0C3 514 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 EHD1Q9H4M9 534 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 METTL5Q9NRN9 209 aaKnown RBP6.56□□□□□ -1.36
VPS35-201ENST00000299138 TMEM45AQ9NWC5 275 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 BAIAP2Q9UQB8 552 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 A0A087WXM4 84 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 MAGEB16A2A368 324 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 DPPA5A6NC42 116 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 LINGO3P0C6S8 592 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 AKR1B1P15121 316 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 S100A2P29034 98 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 EPHB2P29323 1055 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 GCLMP48507 274 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 RHBDL3P58872 404 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 FRG1Q14331 258 aaKnown RBP6.56□□□□□ -1.36
VPS35-201ENST00000299138 DLGAP5Q15398 846 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 ARSHQ5FYA8 562 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 ABRAXAS1Q6UWZ7 409 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 SLC35B2Q8TB61 432 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 PIWIL2Q8TC59 973 aaKnown RBP6.56□□□□□ -1.36
VPS35-201ENST00000299138 SH3KBP1Q96B97 665 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 SGF29Q96ES7 293 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 SRPK1Q96SB4 655 aaKnown RBP6.56□□□□□ -1.36
VPS35-201ENST00000299138 STARD7Q9NQZ5 370 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 SELENONQ9NZV5 590 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 AFF4Q9UHB7 1163 aaKnown RBP6.56□□□□□ -1.36
VPS35-201ENST00000299138 ADAM30Q9UKF2 790 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 DOCK2Q92608 1830 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 USP17L10C9JJH3 530 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 H0YIN7 160 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 RALAP11233 206 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 IVDP26440 423 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 TKTP29401 623 aaKnown RBP6.55□□□□□ -1.36
VPS35-201ENST00000299138 WDR4P57081 412 aaKnown RBP6.55□□□□□ -1.36
VPS35-201ENST00000299138 ROR1Q01973 937 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 TFDP1Q14186 410 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 FAXCQ5TGI0 409 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 ANKS6Q68DC2 871 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 TUBA3EQ6PEY2 450 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 OTOP1Q7RTM1 612 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 DENND6BQ8NEG7 585 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms