RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 FRA10AC1Q70Z53 315 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 FAM71AQ8IYT1 594 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 IPMKQ8NFU5 416 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 PDCD6IPQ8WUM4 868 aaKnown RBP15.74■□□□□ 0.11
SHH-201ENST00000297261 SEMA4DQ92854 862 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 TMEM109Q9BVC6 243 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 MAFO75444 373 aaPredicted RBP15.74■□□□□ 0.11
SHH-201ENST00000297261 RARBP10826 455 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 GCNT1Q02742 428 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 FASTKD3Q14CZ7 662 aaKnown RBP15.74■□□□□ 0.11
SHH-201ENST00000297261 PDK1Q15118 436 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 DCAF6Q58WW2 860 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 ACSBG2Q5FVE4 666 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 BHLHE22Q8NFJ8 381 aaPredicted RBP15.74■□□□□ 0.11
SHH-201ENST00000297261 TSPAN14Q8NG11 270 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 TFB1MQ8WVM0 346 aaKnown RBP15.74■□□□□ 0.11
SHH-201ENST00000297261 RXFP2Q8WXD0 754 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 PCDHB18PQ96TA0 734 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 FRMD8P1Q9BZ68 369 aaPredicted RBP15.74■□□□□ 0.11
SHH-201ENST00000297261 LINC00854A0A1B0GVQ3 168 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 ACKR2O00590 384 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 RPL22P35268 128 aaKnown RBP15.73■□□□□ 0.11
SHH-201ENST00000297261 ABCG1P45844 678 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 CPT1AP50416 773 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 TAS2R40P59535 323 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 ABCE1P61221 599 aaKnown RBP15.73■□□□□ 0.11
SHH-201ENST00000297261 TRAF2Q12933 501 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 ACVR2BQ13705 512 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 DPYSL3Q14195 570 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 EGFL6Q8IUX8 553 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 PCDH20Q8N6Y1 951 aaKnown RBP15.73■□□□□ 0.11
SHH-201ENST00000297261 CRYGNQ8WXF5 182 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 NT5C1AQ9BXI3 368 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 ACSS3Q9H6R3 686 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 NIPSNAP3AQ9UFN0 247 aaPredicted RBP15.73■□□□□ 0.11
SHH-201ENST00000297261 CCNFP41002 786 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 ZDHHC24Q6UX98 284 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 PTAR1Q7Z6K3 402 aaPredicted RBP15.73■□□□□ 0.11
SHH-201ENST00000297261 BRSK2Q8IWQ3 736 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 MAGEB5Q9BZ81 275 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 PIF1Q9H611 641 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 C15orf38-AP3S2A0A0A6YYH1 394 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 A0A0B4J269 797 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 ADCY6O43306 1168 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 RTP1P59025 263 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 RPL7AP62424 266 aaKnown RBP15.73■□□□□ 0.11
SHH-201ENST00000297261 ITGADQ13349 1161 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 SH3D19Q5HYK7 790 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 ARPINQ7Z6K5 226 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 METTL23Q86XA0 190 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 ABI1Q8IZP0 508 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 OSMRQ99650 979 aa15.73■□□□□ 0.11
SHH-201ENST00000297261 EDIL3O43854 480 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 TRIM13O60858 407 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 PEX11AO75192 247 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 NR1H2P55055 460 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 PCSK7Q16549 785 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 SPDYAQ5MJ70 313 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 NOTUMQ6P988 496 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 VSTM1Q6UX27 236 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 SHC3Q92529 594 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 TUBGCP3Q96CW5 907 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 TAS2R1Q9NYW7 299 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 AP4B1Q9Y6B7 739 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 AK5Q9Y6K8 562 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 HEATR9A2RTY3 570 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 ALOX15BO15296 676 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 TBX10O75333 385 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 PYGLP06737 847 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 UQCRBP14927 111 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 ZFP1Q6P2D0 407 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 C12orf56Q8IXR9 622 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 TTC39CQ8N584 583 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 FAM172AQ8WUF8 416 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 ASPSCR1Q9BZE9 553 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 EXOSC4Q9NPD3 245 aaKnown RBP15.72■□□□□ 0.11
SHH-201ENST00000297261 GIMAP4Q9NUV9 329 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 KLK14Q9P0G3 267 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 MYO1GB0I1T2 1018 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 BTBD19C9JJ37 291 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 RAP1GAPP47736 663 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 WDR4P57081 412 aaKnown RBP15.72■□□□□ 0.11
SHH-201ENST00000297261 NFIL3Q16649 462 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 TMEM134Q9H6X4 195 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 ZDHHC18Q9NUE0 388 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 CCDC167Q9P0B6 97 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 ZMYND8Q9ULU4 1186 aaPredicted RBP15.72■□□□□ 0.11
SHH-201ENST00000297261 RREB1Q92766 1687 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 PRAMEF19Q5SWL8 479 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 GPR142Q7Z601 462 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 GIPC3Q8TF64 312 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 GLMNQ92990 594 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 ZNF560Q96MR9 790 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 TINF2Q9BSI4 451 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 XPNPEP1Q9NQW7 623 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 IARS2Q9NSE4 1012 aaKnown RBP15.72■□□□□ 0.11
SHH-201ENST00000297261 HACD3Q9P035 362 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 RBPJLQ9UBG7 517 aa15.72■□□□□ 0.11
SHH-201ENST00000297261 MGAT5Q09328 741 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 MPP3Q13368 585 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms