RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 MAN1C1Q9NR34 630 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 KCPQ6ZWJ8 1503 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 FGFR3P22607 806 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 MZF1P28698 734 aaPredicted RBP10.08□□□□□ -0.8
COL6A3-201ENST00000295550 PHKG1Q16816 387 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 AGKQ53H12 422 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 BOLA3Q53S33 107 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 COMMD2Q86X83 199 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 C4orf19Q8IY42 314 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 AGBL3Q8NEM8 1001 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 SLC7A14Q8TBB6 771 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 KCNQ5Q9NR82 932 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 PRMT7Q9NVM4 692 aaPredicted RBP10.08□□□□□ -0.8
COL6A3-201ENST00000295550 ATP6V1C1P21283 382 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 GOLGA7BQ2TAP0 167 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 SLC30A1Q9Y6M5 507 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 RBP3P10745 1247 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 SPOCD1Q6ZMY3 1216 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 WDR49Q8IV35 697 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 ZCCHC9Q8N567 271 aaKnown RBP10.08□□□□□ -0.8
COL6A3-201ENST00000295550 LENG1Q96BZ8 264 aaPredicted RBP10.08□□□□□ -0.8
COL6A3-201ENST00000295550 NFIAQ12857 509 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 XRCC4Q13426 336 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 ABRAQ8N0Z2 381 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 CINPQ9BW66 212 aaPredicted RBP10.08□□□□□ -0.8
COL6A3-201ENST00000295550 RPRD1BQ9NQG5 326 aaKnown RBP10.08□□□□□ -0.8
COL6A3-201ENST00000295550 SLC25A13Q9UJS0 675 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 AGAP1Q9UPQ3 857 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 POLRMTO00411 1230 aaKnown RBP10.08□□□□□ -0.8
COL6A3-201ENST00000295550 FASP25445 335 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 CNTFP26441 200 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 GLRBP48167 497 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 ERAP2Q6P179 960 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.08□□□□□ -0.8
COL6A3-201ENST00000295550 FAM228AQ86W67 206 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 PIDD1Q9HB75 910 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 C2CD2Q9Y426 696 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 KIAA0100Q14667 2235 aaKnown RBP10.08□□□□□ -0.8
COL6A3-201ENST00000295550 SLIT2O94813 1529 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 CLOCKO15516 846 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 CYP1A2P05177 515 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 PTGER2P43116 358 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 ACLYP53396 1101 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 NFYCQ13952 458 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 CCDC153Q494R4 210 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 BTN2A1Q7KYR7 527 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 ZSCAN18Q8TBC5 510 aaPredicted RBP10.08□□□□□ -0.8
COL6A3-201ENST00000295550 TPD52L3Q96J77 140 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 ZNF222Q9UK12 451 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 INPP4BO15327 924 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 SHOX2O60902 331 aaPredicted RBP10.08□□□□□ -0.8
COL6A3-201ENST00000295550 RRM1P23921 792 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 CASP5P51878 434 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 OTUD3Q5T2D3 398 aaPredicted RBP10.08□□□□□ -0.8
COL6A3-201ENST00000295550 SEPHS2Q99611 448 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 NUDT12Q9BQG2 462 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 REXO2Q9Y3B8 237 aaKnown RBP10.08□□□□□ -0.8
COL6A3-201ENST00000295550 RCCD1A6NED2 376 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 TIMM44O43615 452 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 RGS2P41220 211 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 TATDN2Q93075 761 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 TMEM237Q96Q45 408 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 C9orf16Q9BUW7 83 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 CRLS1Q9UJA2 301 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 VPS26AO75436 327 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 ECDO95905 644 aaPredicted RBP10.08□□□□□ -0.8
COL6A3-201ENST00000295550 ATP5BP06576 529 aaKnown RBP10.08□□□□□ -0.8
COL6A3-201ENST00000295550 ABCB1P08183 1280 aaPredicted RBP10.08□□□□□ -0.8
COL6A3-201ENST00000295550 ARP10275 920 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 SLC34A1Q06495 639 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 FAM163AQ96GL9 167 aaPredicted RBP10.08□□□□□ -0.8
COL6A3-201ENST00000295550 HPDLQ96IR7 371 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 KCTD10Q9H3F6 313 aa10.08□□□□□ -0.8
COL6A3-201ENST00000295550 TSPAN19P0C672 248 aa10.07□□□□□ -0.8
COL6A3-201ENST00000295550 CPB1P15086 417 aa10.07□□□□□ -0.8
COL6A3-201ENST00000295550 CCNJLQ8IV13 435 aa10.07□□□□□ -0.8
COL6A3-201ENST00000295550 SPIRE2Q8WWL2 714 aa10.07□□□□□ -0.8
COL6A3-201ENST00000295550 HSD3B7Q9H2F3 369 aa10.07□□□□□ -0.8
COL6A3-201ENST00000295550 RIBC2Q9H4K1 309 aa10.07□□□□□ -0.8
COL6A3-201ENST00000295550 TUBA8Q9NY65 449 aaPredicted RBP10.07□□□□□ -0.8
COL6A3-201ENST00000295550 TMX2Q9Y320 296 aa10.07□□□□□ -0.8
COL6A3-201ENST00000295550 STK25O00506 426 aa10.07□□□□□ -0.8
COL6A3-201ENST00000295550 GLRA3O75311 464 aa10.07□□□□□ -0.8
COL6A3-201ENST00000295550 CHRM3P20309 590 aa10.07□□□□□ -0.8
COL6A3-201ENST00000295550 BGNP21810 368 aa10.07□□□□□ -0.8
COL6A3-201ENST00000295550 DDX39BQ13838 428 aaKnown RBP10.07□□□□□ -0.8
COL6A3-201ENST00000295550 MFSD4BQ5TF39 518 aa10.07□□□□□ -0.8
COL6A3-201ENST00000295550 PDPK2PQ6A1A2 396 aa10.07□□□□□ -0.8
COL6A3-201ENST00000295550 SDE2Q6IQ49 451 aa10.07□□□□□ -0.8
COL6A3-201ENST00000295550 PEG10Q86TG7 708 aaKnown RBP10.07□□□□□ -0.8
COL6A3-201ENST00000295550 TAS1R2Q8TE23 839 aa10.07□□□□□ -0.8
COL6A3-201ENST00000295550 HAS1Q92839 578 aa10.07□□□□□ -0.8
COL6A3-201ENST00000295550 PADI4Q9UM07 663 aa10.07□□□□□ -0.8
COL6A3-201ENST00000295550 TPRKBQ9Y3C4 175 aa10.07□□□□□ -0.8
COL6A3-201ENST00000295550 PCP4L1A6NKN8 68 aa10.07□□□□□ -0.8
COL6A3-201ENST00000295550 PGM3O95394 542 aa10.07□□□□□ -0.8
COL6A3-201ENST00000295550 NUDT17P0C025 328 aa10.07□□□□□ -0.8
COL6A3-201ENST00000295550 CHRNA5P30532 468 aa10.07□□□□□ -0.8
COL6A3-201ENST00000295550 C2CD6Q53TS8 623 aa10.07□□□□□ -0.8
COL6A3-201ENST00000295550 DCAF6Q58WW2 860 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms