RNA–Protein interactions for RNA: ENST00000263897.9

USE1-201, Transcript of unconventional SNARE in the ER 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USE1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-201ENST00000263897 VPS16Q9H269 839 aa16.67■□□□□ 0.26
USE1-201ENST00000263897 TMEM245Q9H330 911 aa16.67■□□□□ 0.26
USE1-201ENST00000263897 PLCB1Q9NQ66 1216 aa16.67■□□□□ 0.26
USE1-201ENST00000263897 TAB2Q9NYJ8 693 aa16.67■□□□□ 0.26
USE1-201ENST00000263897 XPO7Q9UIA9 1087 aaKnown RBP16.67■□□□□ 0.26
USE1-201ENST00000263897 PILRBQ9UKJ0 227 aa16.67■□□□□ 0.26
USE1-201ENST00000263897 TNRC6BQ9UPQ9 1833 aaKnown RBP16.66■□□□□ 0.26
USE1-201ENST00000263897 LNP1A1A4G5 178 aa16.66■□□□□ 0.26
USE1-201ENST00000263897 TYW5A2RUC4 315 aaKnown RBP16.66■□□□□ 0.26
USE1-201ENST00000263897 HSF2BPO75031 334 aa16.66■□□□□ 0.26
USE1-201ENST00000263897 GRAP2O75791 330 aa16.66■□□□□ 0.26
USE1-201ENST00000263897 ERBB2P04626 1255 aa16.66■□□□□ 0.26
USE1-201ENST00000263897 ATP5BP06576 529 aaKnown RBP16.66■□□□□ 0.26
USE1-201ENST00000263897 DLDP09622 509 aaKnown RBP16.66■□□□□ 0.26
USE1-201ENST00000263897 SLC2A3P11169 496 aa16.66■□□□□ 0.26
USE1-201ENST00000263897 CYP11B1P15538 503 aa16.66■□□□□ 0.26
USE1-201ENST00000263897 POLR2EP19388 210 aaKnown RBP16.66■□□□□ 0.26
USE1-201ENST00000263897 ITPKAP23677 461 aa16.66■□□□□ 0.26
USE1-201ENST00000263897 COPAP53621 1224 aa16.66■□□□□ 0.26
USE1-201ENST00000263897 SLC6A3Q01959 620 aa16.66■□□□□ 0.26
USE1-201ENST00000263897 ZNF33AQ06730 810 aa16.66■□□□□ 0.26
USE1-201ENST00000263897 KRT31Q15323 416 aa16.66■□□□□ 0.26
USE1-201ENST00000263897 PTPRNQ16849 979 aa16.66■□□□□ 0.26
USE1-201ENST00000263897 PTPN20Q4JDL3 420 aa16.66■□□□□ 0.26
USE1-201ENST00000263897 SASS6Q6UVJ0 657 aa16.66■□□□□ 0.26
USE1-201ENST00000263897 OLFML1Q6UWY5 402 aa16.66■□□□□ 0.26
USE1-201ENST00000263897 FAM183BPQ6ZVS7 135 aa16.66■□□□□ 0.26
USE1-201ENST00000263897 MFN1Q8IWA4 741 aa16.66■□□□□ 0.26
USE1-201ENST00000263897 CFAP52Q8N1V2 620 aa16.66■□□□□ 0.26
USE1-201ENST00000263897 ATP6V0D2Q8N8Y2 350 aa16.66■□□□□ 0.26
USE1-201ENST00000263897 TMEM35BQ8NCS4 154 aa16.66■□□□□ 0.26
USE1-201ENST00000263897 CYB5D2Q8WUJ1 264 aa16.66■□□□□ 0.26
USE1-201ENST00000263897 DDX1Q92499 740 aaKnown RBP16.66■□□□□ 0.26
USE1-201ENST00000263897 SIPA1Q96FS4 1042 aa16.66■□□□□ 0.26
USE1-201ENST00000263897 ZNF419Q96HQ0 510 aaPredicted RBP16.66■□□□□ 0.26
USE1-201ENST00000263897 LSM14BQ9BX40 385 aaKnown RBP16.66■□□□□ 0.26
USE1-201ENST00000263897 CD93Q9NPY3 652 aa16.66■□□□□ 0.26
USE1-201ENST00000263897 FANCLQ9NW38 375 aa16.66■□□□□ 0.26
USE1-201ENST00000263897 SLC12A6Q9UHW9 1150 aa16.66■□□□□ 0.26
USE1-201ENST00000263897 EVLQ9UI08 416 aaPredicted RBP16.66■□□□□ 0.26
USE1-201ENST00000263897 CEP83Q9Y592 693 aa16.66■□□□□ 0.26
USE1-201ENST00000263897 DNAH14Q0VDD8 3507 aa16.65■□□□□ 0.26
USE1-201ENST00000263897 KCNU1A8MYU2 1149 aa16.65■□□□□ 0.26
USE1-201ENST00000263897 NDUFS2O75306 463 aa16.65■□□□□ 0.26
USE1-201ENST00000263897 HLA-EP13747 358 aa16.65■□□□□ 0.26
USE1-201ENST00000263897 TACR2P21452 398 aa16.65■□□□□ 0.26
USE1-201ENST00000263897 CDH5P33151 784 aaPredicted RBP16.65■□□□□ 0.26
USE1-201ENST00000263897 HOXD12P35452 270 aa16.65■□□□□ 0.26
USE1-201ENST00000263897 CAMK2GQ13555 558 aaPredicted RBP16.65■□□□□ 0.26
USE1-201ENST00000263897 FNDC3BQ53EP0 1204 aaKnown RBP16.65■□□□□ 0.26
USE1-201ENST00000263897 TRIM61Q5EBN2 209 aa16.65■□□□□ 0.26
USE1-201ENST00000263897 PEAR1Q5VY43 1037 aaPredicted RBP16.65■□□□□ 0.26
USE1-201ENST00000263897 RAP1GAP2Q684P5 730 aa16.65■□□□□ 0.26
USE1-201ENST00000263897 SLC26A9Q7LBE3 791 aa16.65■□□□□ 0.26
USE1-201ENST00000263897 SLC41A1Q8IVJ1 513 aa16.65■□□□□ 0.26
USE1-201ENST00000263897 LGI2Q8N0V4 545 aa16.65■□□□□ 0.26
USE1-201ENST00000263897 CARNMT1Q8N4J0 409 aa16.65■□□□□ 0.26
USE1-201ENST00000263897 ZNF397Q8NF99 534 aaPredicted RBP16.65■□□□□ 0.26
USE1-201ENST00000263897 PRCCQ92733 491 aaPredicted RBP16.65■□□□□ 0.26
USE1-201ENST00000263897 TTC17Q96AE7 1141 aa16.65■□□□□ 0.26
USE1-201ENST00000263897 EDEM2Q9BV94 578 aa16.65■□□□□ 0.26
USE1-201ENST00000263897 PDCL3Q9H2J4 239 aa16.65■□□□□ 0.26
USE1-201ENST00000263897 SYNCQ9H7C4 482 aa16.65■□□□□ 0.26
USE1-201ENST00000263897 ANO10Q9NW15 660 aa16.65■□□□□ 0.26
USE1-201ENST00000263897 DDIT4Q9NX09 232 aa16.65■□□□□ 0.26
USE1-201ENST00000263897 WSB2Q9NYS7 404 aaPredicted RBP16.65■□□□□ 0.26
USE1-201ENST00000263897 USP36Q9P275 1121 aaKnown RBP16.65■□□□□ 0.26
USE1-201ENST00000263897 C4orf47A7E2U8 309 aa16.64■□□□□ 0.25
USE1-201ENST00000263897 ABCB4P21439 1286 aa16.64■□□□□ 0.25
USE1-201ENST00000263897 CD6P30203 668 aa16.64■□□□□ 0.25
USE1-201ENST00000263897 CCR1P32246 355 aa16.64■□□□□ 0.25
USE1-201ENST00000263897 NOS2P35228 1153 aa16.64■□□□□ 0.25
USE1-201ENST00000263897 TPMTP51580 245 aa16.64■□□□□ 0.25
USE1-201ENST00000263897 LMAN2Q12907 356 aa16.64■□□□□ 0.25
USE1-201ENST00000263897 FSCBQ5H9T9 825 aa16.64■□□□□ 0.25
USE1-201ENST00000263897 PPM1JQ5JR12 505 aa16.64■□□□□ 0.25
USE1-201ENST00000263897 SLC23A3Q6PIS1 610 aa16.64■□□□□ 0.25
USE1-201ENST00000263897 CHSY1Q86X52 802 aa16.64■□□□□ 0.25
USE1-201ENST00000263897 ZDHHC17Q8IUH5 632 aa16.64■□□□□ 0.25
USE1-201ENST00000263897 CCDC117Q8IWD4 279 aaPredicted RBP16.64■□□□□ 0.25
USE1-201ENST00000263897 OR2T3Q8NH03 318 aa16.64■□□□□ 0.25
USE1-201ENST00000263897 RNF34Q969K3 372 aa16.64■□□□□ 0.25
USE1-201ENST00000263897 PRMT1Q99873 361 aaKnown RBP16.64■□□□□ 0.25
USE1-201ENST00000263897 FAM204AQ9H8W3 233 aa16.64■□□□□ 0.25
USE1-201ENST00000263897 SUN2Q9UH99 717 aa16.64■□□□□ 0.25
USE1-201ENST00000263897 INTS6Q9UL03 887 aaKnown RBP16.64■□□□□ 0.25
USE1-201ENST00000263897 SYNJ2BP-COX16A0A087WUM0 186 aa16.63■□□□□ 0.25
USE1-201ENST00000263897 F8VZ95 297 aa16.63■□□□□ 0.25
USE1-201ENST00000263897 H0Y626 953 aa16.63■□□□□ 0.25
USE1-201ENST00000263897 CDX4O14627 284 aaPredicted RBP16.63■□□□□ 0.25
USE1-201ENST00000263897 LUC7L3O95232 432 aaKnown RBP16.63■□□□□ 0.25
USE1-201ENST00000263897 TPM2P07951 284 aa16.63■□□□□ 0.25
USE1-201ENST00000263897 C7P10643 843 aa16.63■□□□□ 0.25
USE1-201ENST00000263897 OXTRP30559 389 aa16.63■□□□□ 0.25
USE1-201ENST00000263897 GABRB2P47870 512 aa16.63■□□□□ 0.25
USE1-201ENST00000263897 CDH18Q13634 790 aa16.63■□□□□ 0.25
USE1-201ENST00000263897 DUOXA1Q1HG43 343 aa16.63■□□□□ 0.25
USE1-201ENST00000263897 FKBP15Q5T1M5 1219 aa16.63■□□□□ 0.25
USE1-201ENST00000263897 TAF3Q5VWG9 929 aa16.63■□□□□ 0.25
USE1-201ENST00000263897 NOP9Q86U38 636 aaKnown RBP16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms