RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 PAGE1O75459 146 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 CSF2RAP15509 400 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 TYK2P29597 1187 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 TWF1Q12792 350 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 XRCC4Q13426 336 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 SKIV2LQ15477 1246 aaKnown RBP11.92□□□□□ -0.5
VPS4A-201ENST00000254950 PLPP4Q5VZY2 271 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 TAC4Q86UU9 113 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 VSIG1Q86XK7 387 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 ANKLE1Q8NAG6 615 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 SCAMP5Q8TAC9 235 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 SCG3Q8WXD2 468 aaKnown RBP11.92□□□□□ -0.5
VPS4A-201ENST00000254950 SERPINB12Q96P63 405 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 CORO1BQ9BR76 489 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 RHOBTB2Q9BYZ6 727 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 ZYG11BQ9C0D3 744 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 AFF4Q9UHB7 1163 aaKnown RBP11.92□□□□□ -0.5
VPS4A-201ENST00000254950 RPS6KL1Q9Y6S9 549 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 MCM3APO60318 1980 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 HGSO14964 777 aaPredicted RBP11.91□□□□□ -0.5
VPS4A-201ENST00000254950 GABRB2P47870 512 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 LRRC6Q86X45 466 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 LRRC49Q8IUZ0 686 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 FAM126BQ8IXS8 530 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 TMEM130Q8N3G9 435 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 KBTBD7Q8WVZ9 684 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 TOX2Q96NM4 488 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 SYT11Q9BT88 431 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 ATP13A1Q9HD20 1204 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 WDR91A4D1P6 747 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 CBX4O00257 560 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 ETS1P14921 441 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 SMAD3P84022 425 aaKnown RBP11.91□□□□□ -0.5
VPS4A-201ENST00000254950 OGDHQ02218 1023 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 FAM26DQ5JW98 314 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 TPGS2Q68CL5 300 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 ZCCHC9Q8N567 271 aaKnown RBP11.91□□□□□ -0.5
VPS4A-201ENST00000254950 WDTC1Q8N5D0 677 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 PDCD7Q8N8D1 485 aaKnown RBP11.91□□□□□ -0.5
VPS4A-201ENST00000254950 LRRC40Q9H9A6 602 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 DICER1Q9UPY3 1922 aaKnown RBP11.91□□□□□ -0.5
VPS4A-201ENST00000254950 TRAV19A0A0A6YYK7 116 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 GPR17Q13304 367 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 ZSCAN26Q16670 478 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 SH3PXD2AQ5TCZ1 1133 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 RETSATQ6NUM9 610 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 KLC3Q6P597 504 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 PLD5Q8N7P1 536 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 EFHBQ8N7U6 833 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 CMASQ8NFW8 434 aaPredicted RBP11.91□□□□□ -0.5
VPS4A-201ENST00000254950 TTC17Q96AE7 1141 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 CCDC97Q96F63 343 aaPredicted RBP11.91□□□□□ -0.5
VPS4A-201ENST00000254950 BTN2A3PQ96KV6 586 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 APOL2Q9BQE5 337 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 UBXN6Q9BZV1 441 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 PNPLA8Q9NP80 782 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 RAD54BQ9Y620 910 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 WDR90Q96KV7 1748 aa11.91□□□□□ -0.5
VPS4A-201ENST00000254950 F8W8V4 182 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 DDHD2O94830 711 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 CD48P09326 243 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 GABRR2P28476 465 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 IRX4P78413 519 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 CDK16Q00536 496 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 PLEKHG4Q58EX7 1191 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 ZNF572Q7Z3I7 529 aaPredicted RBP11.9□□□□□ -0.5
VPS4A-201ENST00000254950 CCDC185Q8N715 623 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 RILPQ96NA2 401 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 KCTD15Q96SI1 283 aaPredicted RBP11.9□□□□□ -0.5
VPS4A-201ENST00000254950 C20orf96Q9NUD7 363 aaPredicted RBP11.9□□□□□ -0.5
VPS4A-201ENST00000254950 NR2E1Q9Y466 385 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 SUN1O94901 812 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 SPATA31D3P0C874 917 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 L1CAMP32004 1257 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 GEMIN4P57678 1058 aaKnown RBP11.9□□□□□ -0.5
VPS4A-201ENST00000254950 PARP6Q2NL67 630 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 ANKRD20A2Q5SQ80 823 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 ANKRD20A1Q5TYW2 823 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 SPATA31D4Q6ZUB0 917 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 C12orf50Q8NA57 414 aaPredicted RBP11.9□□□□□ -0.5
VPS4A-201ENST00000254950 USP13Q92995 863 aaPredicted RBP11.9□□□□□ -0.5
VPS4A-201ENST00000254950 ALKBH8Q96BT7 664 aaKnown RBP11.9□□□□□ -0.5
VPS4A-201ENST00000254950 ADAM33Q9BZ11 813 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 CCDC85CA6NKD9 419 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 NEMP1O14524 444 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 STAMBPO95630 424 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 SNRPAP09012 282 aaKnown RBP11.9□□□□□ -0.5
VPS4A-201ENST00000254950 CDC25CP30307 473 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 SYPL2Q5VXT5 272 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 FBF1Q8TES7 1133 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 C8orf48Q96LL4 319 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 ETNK2Q9NVF9 386 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 NSMCE4AQ9NXX6 385 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 UBP1Q9NZI7 540 aa11.9□□□□□ -0.5
VPS4A-201ENST00000254950 SMG5Q9UPR3 1016 aaKnown RBP11.9□□□□□ -0.5
VPS4A-201ENST00000254950 MRPL42Q9Y6G3 142 aaKnown RBP11.9□□□□□ -0.5
VPS4A-201ENST00000254950 HSPA1AP0DMV8 641 aaKnown RBP11.89□□□□□ -0.51
VPS4A-201ENST00000254950 HSPA1BP0DMV9 641 aaKnown RBP11.89□□□□□ -0.51
VPS4A-201ENST00000254950 MYBL2P10244 700 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 GBE1Q04446 702 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms