RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 ATG16L2Q8NAA4 619 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 OR56A4Q8NGH8 313 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 FAXDC2Q96IV6 333 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 SCGB3A2Q96PL1 93 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 TRIT1Q9H3H1 467 aaKnown RBP6.21□□□□□ -1.42
VPS13D-201ENST00000011700 ANKHQ9HCJ1 492 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 TMX2Q9Y320 296 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 KBTBD13C9JR72 458 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 NMT2O60551 498 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 ZNF7P17097 686 aaPredicted RBP6.21□□□□□ -1.42
VPS13D-201ENST00000011700 ROR2Q01974 943 aaKnown RBP6.21□□□□□ -1.42
VPS13D-201ENST00000011700 NME3Q13232 169 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 ANO7Q6IWH7 933 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 ZNF607Q96SK3 696 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 ZSWIM1Q9BR11 485 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 HDHD2Q9H0R4 259 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 CLN6Q9NWW5 311 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 CDH7Q9ULB5 785 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 SLC9A8Q9Y2E8 581 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 VGLL3A8MV65 326 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 GATBO75879 557 aaKnown RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 FARP2O94887 1054 aaPredicted RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 VAV1P15498 845 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 ALDH7A1P49419 539 aaKnown RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 PTENP60484 403 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 CDC42P60953 191 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 TNK2Q07912 1038 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 ZNHIT3Q15649 155 aaPredicted RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 PAPD7Q5XG87 772 aaKnown RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 LMBRD2Q68DH5 695 aaPredicted RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 SMYD4Q8IYR2 804 aaPredicted RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 NATD1Q8N6N6 113 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 HPDLQ96IR7 371 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 APOL6Q9BWW8 343 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 WDCPQ9H6R7 721 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 REEP1Q9H902 201 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 INTS7Q9NVH2 962 aaKnown RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 NAV1Q8NEY1 1877 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 STX16-NPEPL1H3BU86 382 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 GPR182O15218 404 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 SIN3BO75182 1162 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 CYP2A6P11509 494 aaPredicted RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 CPB1P15086 417 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 ME2P23368 584 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 TAF6P49848 677 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 ZNF484Q5JVG2 852 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 SP8Q8IXZ3 490 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 AVL9Q8NBF6 648 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 ZNF512Q96ME7 567 aaPredicted RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 THUMPD1Q9NXG2 353 aaKnown RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 GGA3Q9NZ52 723 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 CORO1CQ9ULV4 474 aaPredicted RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 F5H5T6 163 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 SERPINB7O75635 380 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 HMBSP08397 361 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 CYP11B1P15538 503 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 ZNF12P17014 697 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 GPR15P49685 360 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 TRIM25Q14258 630 aaKnown RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 TRIM40Q6P9F5 258 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 ADSSL1Q8N142 457 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 TDRD5Q8NAT2 981 aaKnown RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 COX4I2Q96KJ9 171 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 ZDHHC15Q96MV8 337 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 ANKZF1Q9H8Y5 726 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 PRPF19Q9UMS4 504 aaKnown RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 MAGED2Q9UNF1 606 aaPredicted RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 NCOA3Q9Y6Q9 1424 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 HIST1H2ABP04908 130 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 ERP29P30040 261 aaKnown RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 ATRXP46100 2492 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 ST3GAL1Q11201 340 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 SNAPC2Q13487 334 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 HIST3H2AQ7L7L0 130 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 PROSER1Q86XN7 944 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 OR8H2Q8N162 312 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 HIST1H2ACQ93077 130 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 MCEEQ96PE7 176 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 BTBD10Q9BSF8 475 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 LRRC4BQ9NT99 713 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 MRPL39Q9NYK5 338 aaKnown RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 NR2E3Q9Y5X4 410 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 ZFC3H1O60293 1989 aaKnown RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 NPHP4O75161 1426 aaPredicted RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 ENTPD3O75355 529 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 GH1P01241 217 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 TUFMP49411 452 aaKnown RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 SCRN3Q0VDG4 424 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 GRHL2Q6ISB3 625 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 FAM173BQ6P4H8 233 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 PIWIL4Q7Z3Z4 852 aaKnown RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 FCGR1BQ92637 280 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 SERAC1Q96JX3 654 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 UBQLN1Q9UMX0 589 aaKnown RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 NDUFAF1Q9Y375 327 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 NUP98P52948 1817 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 CEP250Q9BV73 2442 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 NCOR1O75376 2440 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 LOC100653049A0A140TA62 436 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms