RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 TBCBQ99426 244 aa4.81□□□□□ -1.64
CD44-239ENST00000639002 FSCN3Q9NQT6 498 aa4.81□□□□□ -1.64
CD44-239ENST00000639002 DECR2Q9NUI1 292 aa4.81□□□□□ -1.64
CD44-239ENST00000639002 B3GNT3Q9Y2A9 372 aa4.81□□□□□ -1.64
CD44-239ENST00000639002 APOL1O14791 398 aa4.8□□□□□ -1.64
CD44-239ENST00000639002 PRPF4O43172 522 aaKnown RBP eCLIP4.8□□□□□ -1.64
CD44-239ENST00000639002 KAT7O95251 611 aa4.8□□□□□ -1.64
CD44-239ENST00000639002 CDKN2AP42771 156 aaKnown RBP4.8□□□□□ -1.64
CD44-239ENST00000639002 INPP5JQ15735 1006 aaPredicted RBP4.8□□□□□ -1.64
CD44-239ENST00000639002 GPR162Q16538 588 aa4.8□□□□□ -1.64
CD44-239ENST00000639002 PRTGQ2VWP7 1150 aa4.8□□□□□ -1.64
CD44-239ENST00000639002 PIK3CD-AS1Q5SR53 167 aa4.8□□□□□ -1.64
CD44-239ENST00000639002 MSANTD2Q6P1R3 559 aa4.8□□□□□ -1.64
CD44-239ENST00000639002 ANKRD13AQ8IZ07 590 aa4.8□□□□□ -1.64
CD44-239ENST00000639002 EME1Q96AY2 570 aa4.8□□□□□ -1.64
CD44-239ENST00000639002 GPR78Q96P69 363 aa4.8□□□□□ -1.64
CD44-239ENST00000639002 NUDT22Q9BRQ3 303 aa4.8□□□□□ -1.64
CD44-239ENST00000639002 NAA15Q9BXJ9 866 aaKnown RBP4.8□□□□□ -1.64
CD44-239ENST00000639002 FAM50BQ9Y247 325 aa4.8□□□□□ -1.64
CD44-239ENST00000639002 EMSYQ7Z589 1322 aa4.79□□□□□ -1.64
CD44-239ENST00000639002 A6NNC1 897 aa4.79□□□□□ -1.64
CD44-239ENST00000639002 SGPL1O95470 568 aa4.79□□□□□ -1.64
CD44-239ENST00000639002 GSTM5P46439 218 aa4.79□□□□□ -1.64
CD44-239ENST00000639002 POLD2P49005 469 aa4.79□□□□□ -1.64
CD44-239ENST00000639002 ALDH7A1P49419 539 aaKnown RBP4.79□□□□□ -1.64
CD44-239ENST00000639002 HIBCHQ6NVY1 386 aaPredicted RBP4.79□□□□□ -1.64
CD44-239ENST00000639002 DHRS13Q6UX07 377 aa4.79□□□□□ -1.64
CD44-239ENST00000639002 RBMXL3Q8N7X1 1067 aaKnown RBP4.79□□□□□ -1.64
CD44-239ENST00000639002 EXD3Q8N9H8 876 aa4.79□□□□□ -1.64
CD44-239ENST00000639002 CCDC150Q8NCX0 1101 aa4.79□□□□□ -1.64
CD44-239ENST00000639002 ZFPM2Q8WW38 1151 aa4.79□□□□□ -1.64
CD44-239ENST00000639002 RGL1Q9NZL6 768 aa4.79□□□□□ -1.64
CD44-239ENST00000639002 CNTNAP2Q9UHC6 1331 aa4.78□□□□□ -1.64
CD44-239ENST00000639002 APAF1O14727 1248 aa4.78□□□□□ -1.64
CD44-239ENST00000639002 SLC3A2P08195 630 aaKnown RBP4.78□□□□□ -1.64
CD44-239ENST00000639002 CHRNB1P11230 501 aa4.78□□□□□ -1.64
CD44-239ENST00000639002 AKR1A1P14550 325 aa4.78□□□□□ -1.64
CD44-239ENST00000639002 ARRB2P32121 409 aa4.78□□□□□ -1.64
CD44-239ENST00000639002 SLC8A1P32418 973 aa4.78□□□□□ -1.64
CD44-239ENST00000639002 COBLL1Q53SF7 1204 aa4.78□□□□□ -1.64
CD44-239ENST00000639002 LIPMQ5VYY2 423 aa4.78□□□□□ -1.64
CD44-239ENST00000639002 LVRNQ6Q4G3 990 aa4.78□□□□□ -1.64
CD44-239ENST00000639002 NPIPB3Q92617 1050 aa4.78□□□□□ -1.64
CD44-239ENST00000639002 GRAMD1AQ96CP6 724 aa4.78□□□□□ -1.64
CD44-239ENST00000639002 ZNF347Q96SE7 839 aa4.78□□□□□ -1.64
CD44-239ENST00000639002 IL21RQ9HBE5 538 aa4.78□□□□□ -1.64
CD44-239ENST00000639002 UTS2RQ9UKP6 389 aa4.78□□□□□ -1.64
CD44-239ENST00000639002 GXYLT2A0PJZ3 443 aa4.77□□□□□ -1.65
CD44-239ENST00000639002 FAM234BA2RU67 622 aa4.77□□□□□ -1.65
CD44-239ENST00000639002 PRR23D1E9PI22 279 aaPredicted RBP4.77□□□□□ -1.65
CD44-239ENST00000639002 NPC1O15118 1278 aa4.77□□□□□ -1.65
CD44-239ENST00000639002 NCK2O43639 380 aa4.77□□□□□ -1.65
CD44-239ENST00000639002 PPP6R2O75170 966 aa4.77□□□□□ -1.65
CD44-239ENST00000639002 TAF5LO75529 589 aa4.77□□□□□ -1.65
CD44-239ENST00000639002 VIPP01282 170 aa4.77□□□□□ -1.65
CD44-239ENST00000639002 PRR23D2P0DMB1 279 aaPredicted RBP4.77□□□□□ -1.65
CD44-239ENST00000639002 HARSP12081 509 aaKnown RBP4.77□□□□□ -1.65
CD44-239ENST00000639002 PLA2G2AP14555 144 aa4.77□□□□□ -1.65
CD44-239ENST00000639002 P2RX3P56373 397 aa4.77□□□□□ -1.65
CD44-239ENST00000639002 KRTAP10-6P60371 365 aaPredicted RBP4.77□□□□□ -1.65
CD44-239ENST00000639002 PMS2P11Q13670 270 aa4.77□□□□□ -1.65
CD44-239ENST00000639002 PTGR1Q14914 329 aa4.77□□□□□ -1.65
CD44-239ENST00000639002 MAPKAPK3Q16644 382 aa4.77□□□□□ -1.65
CD44-239ENST00000639002 ARL13BQ3SXY8 428 aa4.77□□□□□ -1.65
CD44-239ENST00000639002 ANXA2RQ3ZCQ2 193 aa4.77□□□□□ -1.65
CD44-239ENST00000639002 KIAA1755Q5JYT7 1200 aa4.77□□□□□ -1.65
CD44-239ENST00000639002 TMEM199Q8N511 208 aa4.77□□□□□ -1.65
CD44-239ENST00000639002 KAT2BQ92831 832 aa4.77□□□□□ -1.65
CD44-239ENST00000639002 MCRS1Q96EZ8 462 aa4.77□□□□□ -1.65
CD44-239ENST00000639002 PAAF1Q9BRP4 392 aa4.77□□□□□ -1.65
CD44-239ENST00000639002 SARGQ9BW04 601 aa4.77□□□□□ -1.65
CD44-239ENST00000639002 AAMDCQ9H7C9 122 aa4.77□□□□□ -1.65
CD44-239ENST00000639002 MRPL44Q9H9J2 332 aaKnown RBP4.77□□□□□ -1.65
CD44-239ENST00000639002 DTNAQ9Y4J8 743 aa4.77□□□□□ -1.65
CD44-239ENST00000639002 SYF2O95926 243 aaKnown RBP4.76□□□□□ -1.65
CD44-239ENST00000639002 ITGA5P08648 1049 aa4.76□□□□□ -1.65
CD44-239ENST00000639002 SRGAP2BP0DMP2 458 aa4.76□□□□□ -1.65
CD44-239ENST00000639002 PPATQ06203 517 aa4.76□□□□□ -1.65
CD44-239ENST00000639002 DLGAP5Q15398 846 aa4.76□□□□□ -1.65
CD44-239ENST00000639002 B4GALNT4Q76KP1 1039 aa4.76□□□□□ -1.65
CD44-239ENST00000639002 SLC22A17Q8WUG5 538 aa4.76□□□□□ -1.65
CD44-239ENST00000639002 ZNF479Q96JC4 524 aa4.76□□□□□ -1.65
CD44-239ENST00000639002 WDR83Q9BRX9 315 aaKnown RBP4.76□□□□□ -1.65
CD44-239ENST00000639002 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.76□□□□□ -1.65
CD44-239ENST00000639002 ERVK-5Q9HDB9 667 aa4.76□□□□□ -1.65
CD44-239ENST00000639002 KCNK9Q9NPC2 374 aa4.76□□□□□ -1.65
CD44-239ENST00000639002 STARD7Q9NQZ5 370 aa4.76□□□□□ -1.65
CD44-239ENST00000639002 LAMP3Q9UQV4 416 aa4.76□□□□□ -1.65
CD44-239ENST00000639002 PCDHB7Q9Y5E2 793 aa4.76□□□□□ -1.65
CD44-239ENST00000639002 TCF20Q9UGU0 1960 aaKnown RBP4.75□□□□□ -1.65
CD44-239ENST00000639002 C4orf47A7E2U8 309 aa4.75□□□□□ -1.65
CD44-239ENST00000639002 J3KTA2 159 aa4.75□□□□□ -1.65
CD44-239ENST00000639002 PMM2O15305 246 aa4.75□□□□□ -1.65
CD44-239ENST00000639002 SLC28A2O43868 658 aa4.75□□□□□ -1.65
CD44-239ENST00000639002 SLC37A1P57057 533 aa4.75□□□□□ -1.65
CD44-239ENST00000639002 NSUN2Q08J23 767 aaKnown RBP eCLIP4.75□□□□□ -1.65
CD44-239ENST00000639002 SLC35G1Q2M3R5 365 aa4.75□□□□□ -1.65
CD44-239ENST00000639002 P3H1Q32P28 736 aa4.75□□□□□ -1.65
CD44-239ENST00000639002 GLE1Q53GS7 698 aaKnown RBP4.75□□□□□ -1.65
CD44-239ENST00000639002 FAM209BQ5JX69 171 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms