RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 MXI1P50539 228 aa17.15■□□□□ 0.34
CLN3-255ENST00000637100 AFF3P51826 1226 aaKnown RBP17.15■□□□□ 0.34
CLN3-255ENST00000637100 NDUFA8P51970 172 aa17.15■□□□□ 0.34
CLN3-255ENST00000637100 BCAT1P54687 386 aa17.15■□□□□ 0.34
CLN3-255ENST00000637100 CAMK2BQ13554 666 aa17.15■□□□□ 0.34
CLN3-255ENST00000637100 COBLL1Q53SF7 1204 aa17.15■□□□□ 0.34
CLN3-255ENST00000637100 MSANTD2Q6P1R3 559 aa17.15■□□□□ 0.34
CLN3-255ENST00000637100 KRBA2Q6ZNG9 492 aa17.15■□□□□ 0.34
CLN3-255ENST00000637100 RSRC2Q7L4I2 434 aaKnown RBP17.15■□□□□ 0.34
CLN3-255ENST00000637100 FMNL3Q8IVF7 1028 aa17.15■□□□□ 0.34
CLN3-255ENST00000637100 CCDC47Q96A33 483 aaKnown RBP17.15■□□□□ 0.34
CLN3-255ENST00000637100 AZIN2Q96A70 460 aa17.15■□□□□ 0.34
CLN3-255ENST00000637100 LHX5Q9H2C1 402 aa17.15■□□□□ 0.34
CLN3-255ENST00000637100 CCDC86Q9H6F5 360 aaKnown RBP17.15■□□□□ 0.34
CLN3-255ENST00000637100 C6orf106Q9H6K1 298 aaPredicted RBP17.15■□□□□ 0.34
CLN3-255ENST00000637100 PRSS16Q9NQE7 514 aa17.15■□□□□ 0.34
CLN3-255ENST00000637100 MAPK8IP1Q9UQF2 711 aa17.15■□□□□ 0.34
CLN3-255ENST00000637100 ZDHHC9Q9Y397 364 aa17.15■□□□□ 0.34
CLN3-255ENST00000637100 APC2O95996 2303 aa17.15■□□□□ 0.34
CLN3-255ENST00000637100 A0A1B0GVT2 93 aa17.14■□□□□ 0.33
CLN3-255ENST00000637100 A0A1W2PQ27 194 aa17.14■□□□□ 0.33
CLN3-255ENST00000637100 A0A1W2PQ64 194 aa17.14■□□□□ 0.33
CLN3-255ENST00000637100 GABBR2O75899 941 aa17.14■□□□□ 0.33
CLN3-255ENST00000637100 HARS2P49590 506 aaKnown RBP17.14■□□□□ 0.33
CLN3-255ENST00000637100 CSNK1EP49674 416 aaKnown RBP17.14■□□□□ 0.33
CLN3-255ENST00000637100 SLC8A3P57103 927 aa17.14■□□□□ 0.33
CLN3-255ENST00000637100 RPS14P62263 151 aaKnown RBP17.14■□□□□ 0.33
CLN3-255ENST00000637100 BST2Q10589 180 aaKnown RBP17.14■□□□□ 0.33
CLN3-255ENST00000637100 ARID5BQ14865 1188 aa17.14■□□□□ 0.33
CLN3-255ENST00000637100 KIF19Q2TAC6 998 aa17.14■□□□□ 0.33
CLN3-255ENST00000637100 BSPRYQ5W0U4 402 aa17.14■□□□□ 0.33
CLN3-255ENST00000637100 NDRG1Q92597 394 aaKnown RBP17.14■□□□□ 0.33
CLN3-255ENST00000637100 TMA16Q96EY4 203 aaKnown RBP17.14■□□□□ 0.33
CLN3-255ENST00000637100 MYO19Q96H55 970 aa17.14■□□□□ 0.33
CLN3-255ENST00000637100 MIR1-1HGQ9H1L0 117 aa17.14■□□□□ 0.33
CLN3-255ENST00000637100 TM9SF3Q9HD45 589 aa17.14■□□□□ 0.33
CLN3-255ENST00000637100 SCUBE2Q9NQ36 999 aa17.14■□□□□ 0.33
CLN3-255ENST00000637100 CNGB3Q9NQW8 809 aa17.14■□□□□ 0.33
CLN3-255ENST00000637100 ABCC13Q9NSE7 274 aa17.14■□□□□ 0.33
CLN3-255ENST00000637100 TSPAN16Q9UKR8 245 aa17.14■□□□□ 0.33
CLN3-255ENST00000637100 KIAA1257Q9ULG3 409 aa17.14■□□□□ 0.33
CLN3-255ENST00000637100 ACACAQ13085 2346 aa17.14■□□□□ 0.33
CLN3-255ENST00000637100 YJEFN3A6XGL0 299 aa17.13■□□□□ 0.33
CLN3-255ENST00000637100 E7ENQ6 273 aa17.13■□□□□ 0.33
CLN3-255ENST00000637100 O00370 1275 aa17.13■□□□□ 0.33
CLN3-255ENST00000637100 DLDP09622 509 aaKnown RBP17.13■□□□□ 0.33
CLN3-255ENST00000637100 ATXN1LP0C7T5 689 aaKnown RBP17.13■□□□□ 0.33
CLN3-255ENST00000637100 HLA-EP13747 358 aa17.13■□□□□ 0.33
CLN3-255ENST00000637100 NUMA1Q14980 2115 aa17.13■□□□□ 0.33
CLN3-255ENST00000637100 CBWD6Q4V339 395 aa17.13■□□□□ 0.33
CLN3-255ENST00000637100 CBWD3Q5JTY5 395 aa17.13■□□□□ 0.33
CLN3-255ENST00000637100 CBWD5Q5RIA9 395 aa17.13■□□□□ 0.33
CLN3-255ENST00000637100 CHST9Q7L1S5 443 aa17.13■□□□□ 0.33
CLN3-255ENST00000637100 AHI1Q8N157 1196 aa17.13■□□□□ 0.33
CLN3-255ENST00000637100 SETD7Q8WTS6 366 aaKnown RBP17.13■□□□□ 0.33
CLN3-255ENST00000637100 SLC35F5Q8WV83 523 aa17.13■□□□□ 0.33
CLN3-255ENST00000637100 IGSF8Q969P0 613 aa17.13■□□□□ 0.33
CLN3-255ENST00000637100 TTC17Q96AE7 1141 aa17.13■□□□□ 0.33
CLN3-255ENST00000637100 BIRC7Q96CA5 298 aa17.13■□□□□ 0.33
CLN3-255ENST00000637100 GGA2Q9UJY4 613 aa17.13■□□□□ 0.33
CLN3-255ENST00000637100 PLA2G4CQ9UP65 541 aa17.13■□□□□ 0.33
CLN3-255ENST00000637100 ANKRD6Q9Y2G4 727 aa17.13■□□□□ 0.33
CLN3-255ENST00000637100 PMM2O15305 246 aa17.12■□□□□ 0.33
CLN3-255ENST00000637100 SETSIPP0DME0 302 aa17.12■□□□□ 0.33
CLN3-255ENST00000637100 VDRP11473 427 aa17.12■□□□□ 0.33
CLN3-255ENST00000637100 PABPC1P11940 636 aaKnown RBP17.12■□□□□ 0.33
CLN3-255ENST00000637100 CD27P26842 260 aa17.12■□□□□ 0.33
CLN3-255ENST00000637100 CTSKP43235 329 aa17.12■□□□□ 0.33
CLN3-255ENST00000637100 DAOAP59103 153 aa17.12■□□□□ 0.33
CLN3-255ENST00000637100 CUL2Q13617 745 aa17.12■□□□□ 0.33
CLN3-255ENST00000637100 SUZ12Q15022 739 aaKnown RBP17.12■□□□□ 0.33
CLN3-255ENST00000637100 SMAD1Q15797 465 aaKnown RBP17.12■□□□□ 0.33
CLN3-255ENST00000637100 SOWAHCQ53LP3 525 aaPredicted RBP17.12■□□□□ 0.33
CLN3-255ENST00000637100 SGO2Q562F6 1265 aa17.12■□□□□ 0.33
CLN3-255ENST00000637100 PIK3R6Q5UE93 754 aa17.12■□□□□ 0.33
CLN3-255ENST00000637100 USP30Q70CQ3 517 aa17.12■□□□□ 0.33
CLN3-255ENST00000637100 KDM1BQ8NB78 822 aa17.12■□□□□ 0.33
CLN3-255ENST00000637100 RHBDD1Q8TEB9 315 aa17.12■□□□□ 0.33
CLN3-255ENST00000637100 IRGQQ8WZA9 623 aa17.12■□□□□ 0.33
CLN3-255ENST00000637100 GOLGA1Q92805 767 aa17.12■□□□□ 0.33
CLN3-255ENST00000637100 EEF2KMTQ96G04 330 aa17.12■□□□□ 0.33
CLN3-255ENST00000637100 SPATA32Q96LK8 384 aa17.12■□□□□ 0.33
CLN3-255ENST00000637100 BTBD1Q9H0C5 482 aa17.12■□□□□ 0.33
CLN3-255ENST00000637100 RSPH9Q9H1X1 276 aaPredicted RBP17.12■□□□□ 0.33
CLN3-255ENST00000637100 MMRN2Q9H8L6 949 aa17.12■□□□□ 0.33
CLN3-255ENST00000637100 LRRC4Q9HBW1 653 aa17.12■□□□□ 0.33
CLN3-255ENST00000637100 SGK2Q9HBY8 427 aa17.12■□□□□ 0.33
CLN3-255ENST00000637100 ABCB8Q9NUT2 735 aa17.12■□□□□ 0.33
CLN3-255ENST00000637100 SUN2Q9UH99 717 aa17.12■□□□□ 0.33
CLN3-255ENST00000637100 SFMBT1Q9UHJ3 866 aa17.12■□□□□ 0.33
CLN3-255ENST00000637100 SCML1Q9UN30 329 aa17.12■□□□□ 0.33
CLN3-255ENST00000637100 BTBD3Q9Y2F9 522 aa17.12■□□□□ 0.33
CLN3-255ENST00000637100 SNX11Q9Y5W9 270 aa17.12■□□□□ 0.33
CLN3-255ENST00000637100 SMG1Q96Q15 3661 aaKnown RBP17.11■□□□□ 0.33
CLN3-255ENST00000637100 CETN3O15182 167 aa17.11■□□□□ 0.33
CLN3-255ENST00000637100 IRAK2O43187 625 aa17.11■□□□□ 0.33
CLN3-255ENST00000637100 TNFSF14O43557 240 aa17.11■□□□□ 0.33
CLN3-255ENST00000637100 DFNA5O60443 496 aa17.11■□□□□ 0.33
CLN3-255ENST00000637100 SEMA4FO95754 770 aa17.11■□□□□ 0.33
CLN3-255ENST00000637100 SGSHP51688 502 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms