RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 SDC3O75056 442 aa15.23■□□□□ 0.03
CLN3-249ENST00000636685 CSO75390 466 aaKnown RBP15.23■□□□□ 0.03
CLN3-249ENST00000636685 CYBBP04839 570 aa15.23■□□□□ 0.03
CLN3-249ENST00000636685 DLATP10515 647 aaKnown RBP15.23■□□□□ 0.03
CLN3-249ENST00000636685 MYF5P13349 255 aa15.23■□□□□ 0.03
CLN3-249ENST00000636685 GAP43P17677 238 aa15.23■□□□□ 0.03
CLN3-249ENST00000636685 MYL6P60660 151 aa15.23■□□□□ 0.03
CLN3-249ENST00000636685 ZNF776Q68DI1 518 aaPredicted RBP15.23■□□□□ 0.03
CLN3-249ENST00000636685 CCDC81Q6ZN84 652 aa15.23■□□□□ 0.03
CLN3-249ENST00000636685 ACOT1Q86TX2 421 aa15.23■□□□□ 0.03
CLN3-249ENST00000636685 SPATS2Q86XZ4 545 aaKnown RBP15.23■□□□□ 0.03
CLN3-249ENST00000636685 SLC2A14Q8TDB8 520 aa15.23■□□□□ 0.03
CLN3-249ENST00000636685 DEPDC7Q96QD5 511 aa15.23■□□□□ 0.03
CLN3-249ENST00000636685 SLC2A11Q9BYW1 496 aa15.23■□□□□ 0.03
CLN3-249ENST00000636685 PABPC3Q9H361 631 aaKnown RBP15.23■□□□□ 0.03
CLN3-249ENST00000636685 CSNK1G1Q9HCP0 422 aa15.23■□□□□ 0.03
CLN3-249ENST00000636685 THSD1Q9NS62 852 aa15.23■□□□□ 0.03
CLN3-249ENST00000636685 FBXL12Q9NXK8 326 aa15.23■□□□□ 0.03
CLN3-249ENST00000636685 AGO1Q9UL18 857 aaKnown RBP15.23■□□□□ 0.03
CLN3-249ENST00000636685 PLA2G4CQ9UP65 541 aa15.23■□□□□ 0.03
CLN3-249ENST00000636685 LIMCH1Q9UPQ0 1083 aa15.23■□□□□ 0.03
CLN3-249ENST00000636685 RELNP78509 3460 aa15.23■□□□□ 0.03
CLN3-249ENST00000636685 USP9YO00507 2555 aaPredicted RBP15.22■□□□□ 0.03
CLN3-249ENST00000636685 OPA1O60313 960 aa15.22■□□□□ 0.03
CLN3-249ENST00000636685 TNNI1P19237 187 aa15.22■□□□□ 0.03
CLN3-249ENST00000636685 HLA-FP30511 346 aa15.22■□□□□ 0.03
CLN3-249ENST00000636685 DAB2P98082 770 aa15.22■□□□□ 0.03
CLN3-249ENST00000636685 LINC00303Q3SY05 128 aa15.22■□□□□ 0.03
CLN3-249ENST00000636685 USP30Q70CQ3 517 aa15.22■□□□□ 0.03
CLN3-249ENST00000636685 CHST9Q7L1S5 443 aa15.22■□□□□ 0.03
CLN3-249ENST00000636685 DENND1CQ8IV53 801 aa15.22■□□□□ 0.03
CLN3-249ENST00000636685 ZC3H3Q8IXZ2 948 aaKnown RBP15.22■□□□□ 0.03
CLN3-249ENST00000636685 OXR1Q8N573 874 aa15.22■□□□□ 0.03
CLN3-249ENST00000636685 GOLGA1Q92805 767 aa15.22■□□□□ 0.03
CLN3-249ENST00000636685 ELMO3Q96BJ8 720 aa15.22■□□□□ 0.03
CLN3-249ENST00000636685 DNAJC19Q96DA6 116 aa15.22■□□□□ 0.03
CLN3-249ENST00000636685 SERAC1Q96JX3 654 aa15.22■□□□□ 0.03
CLN3-249ENST00000636685 TNIP3Q96KP6 325 aa15.22■□□□□ 0.03
CLN3-249ENST00000636685 DCLK3Q9C098 648 aa15.22■□□□□ 0.03
CLN3-249ENST00000636685 XYLT2Q9H1B5 865 aa15.22■□□□□ 0.03
CLN3-249ENST00000636685 ERVMER34-1Q9H9K5 563 aa15.22■□□□□ 0.03
CLN3-249ENST00000636685 RASAL2Q9UJF2 1139 aa15.22■□□□□ 0.03
CLN3-249ENST00000636685 NAGPAQ9UK23 515 aa15.22■□□□□ 0.03
CLN3-249ENST00000636685 NBASA2RRP1 2371 aa15.22■□□□□ 0.03
CLN3-249ENST00000636685 CREBBPQ92793 2442 aa15.21■□□□□ 0.03
CLN3-249ENST00000636685 A0A1W2PP55 124 aa15.21■□□□□ 0.03
CLN3-249ENST00000636685 HHLA1C9JL84 531 aa15.21■□□□□ 0.03
CLN3-249ENST00000636685 SUV39H1O43463 412 aa15.21■□□□□ 0.03
CLN3-249ENST00000636685 SCARA5Q6ZMJ2 495 aa15.21■□□□□ 0.03
CLN3-249ENST00000636685 SCD5Q86SK9 330 aa15.21■□□□□ 0.03
CLN3-249ENST00000636685 ADIPOR2Q86V24 386 aa15.21■□□□□ 0.03
CLN3-249ENST00000636685 RDH13Q8NBN7 331 aa15.21■□□□□ 0.03
CLN3-249ENST00000636685 OR2T34Q8NGX1 318 aa15.21■□□□□ 0.03
CLN3-249ENST00000636685 CGRRF1Q99675 332 aa15.21■□□□□ 0.03
CLN3-249ENST00000636685 SDCBP2Q9H190 292 aa15.21■□□□□ 0.03
CLN3-249ENST00000636685 RSPH9Q9H1X1 276 aaPredicted RBP15.21■□□□□ 0.03
CLN3-249ENST00000636685 NEUROG2Q9H2A3 272 aa15.21■□□□□ 0.03
CLN3-249ENST00000636685 STARD5Q9NSY2 213 aa15.21■□□□□ 0.03
CLN3-249ENST00000636685 FAM49BQ9NUQ9 324 aa15.21■□□□□ 0.03
CLN3-249ENST00000636685 HSPBP1Q9NZL4 362 aa15.21■□□□□ 0.03
CLN3-249ENST00000636685 A0A1W2PNU3 283 aaPredicted RBP15.2■□□□□ 0.02
CLN3-249ENST00000636685 LRRC72A6NJI9 287 aa15.2■□□□□ 0.02
CLN3-249ENST00000636685 C10orf142B7Z368 130 aa15.2■□□□□ 0.02
CLN3-249ENST00000636685 KIAA0391O15091 583 aaKnown RBP15.2■□□□□ 0.02
CLN3-249ENST00000636685 MID1O15344 667 aa15.2■□□□□ 0.02
CLN3-249ENST00000636685 STAU1O95793 577 aaKnown RBP15.2■□□□□ 0.02
CLN3-249ENST00000636685 HOXD9P28356 352 aaPredicted RBP15.2■□□□□ 0.02
CLN3-249ENST00000636685 COG7P83436 770 aa15.2■□□□□ 0.02
CLN3-249ENST00000636685 SKOR1P84550 965 aa15.2■□□□□ 0.02
CLN3-249ENST00000636685 EFEMP1Q12805 493 aa15.2■□□□□ 0.02
CLN3-249ENST00000636685 ZNF211Q13398 564 aaPredicted RBP15.2■□□□□ 0.02
CLN3-249ENST00000636685 TRPC3Q13507 836 aa15.2■□□□□ 0.02
CLN3-249ENST00000636685 UBAP2LQ14157 1087 aaKnown RBP15.2■□□□□ 0.02
CLN3-249ENST00000636685 ZSCAN23Q3MJ62 389 aa15.2■□□□□ 0.02
CLN3-249ENST00000636685 SLC45A4Q5BKX6 768 aa15.2■□□□□ 0.02
CLN3-249ENST00000636685 TMC6Q7Z403 805 aa15.2■□□□□ 0.02
CLN3-249ENST00000636685 SLC25A45Q8N413 288 aa15.2■□□□□ 0.02
CLN3-249ENST00000636685 CPXM2Q8N436 756 aa15.2■□□□□ 0.02
CLN3-249ENST00000636685 C12orf29Q8N999 325 aa15.2■□□□□ 0.02
CLN3-249ENST00000636685 WFIKKN2Q8TEU8 576 aa15.2■□□□□ 0.02
CLN3-249ENST00000636685 ZNF516Q92618 1163 aa15.2■□□□□ 0.02
CLN3-249ENST00000636685 CCDC127Q96BQ5 260 aa15.2■□□□□ 0.02
CLN3-249ENST00000636685 OSBPL2Q9H1P3 480 aa15.2■□□□□ 0.02
CLN3-249ENST00000636685 OLFML3Q9NRN5 406 aa15.2■□□□□ 0.02
CLN3-249ENST00000636685 ABCB8Q9NUT2 735 aa15.2■□□□□ 0.02
CLN3-249ENST00000636685 SUN2Q9UH99 717 aa15.2■□□□□ 0.02
CLN3-249ENST00000636685 SATB2Q9UPW6 733 aa15.2■□□□□ 0.02
CLN3-249ENST00000636685 COL27A1Q8IZC6 1860 aaPredicted RBP15.2■□□□□ 0.02
CLN3-249ENST00000636685 A0A1B0GVM2 712 aa15.19■□□□□ 0.02
CLN3-249ENST00000636685 RNASEH2AO75792 299 aaKnown RBP15.19■□□□□ 0.02
CLN3-249ENST00000636685 AFPP02771 609 aaKnown RBP15.19■□□□□ 0.02
CLN3-249ENST00000636685 FAM200BP0CF97 657 aa15.19■□□□□ 0.02
CLN3-249ENST00000636685 IDEP14735 1019 aa15.19■□□□□ 0.02
CLN3-249ENST00000636685 ITGB6P18564 788 aa15.19■□□□□ 0.02
CLN3-249ENST00000636685 ADORA2BP29275 332 aa15.19■□□□□ 0.02
CLN3-249ENST00000636685 LONP1P36776 959 aaKnown RBP15.19■□□□□ 0.02
CLN3-249ENST00000636685 CCR5P51681 352 aa15.19■□□□□ 0.02
CLN3-249ENST00000636685 EHHADHQ08426 723 aa15.19■□□□□ 0.02
CLN3-249ENST00000636685 ALCAMQ13740 583 aa15.19■□□□□ 0.02
CLN3-249ENST00000636685 ARL13BQ3SXY8 428 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms