RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 NET1Q7Z628 596 aaPredicted RBP13.14□□□□□ -0.31
LINC00540-203ENST00000631321 PYROXD2Q8N2H3 581 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 CCDC33Q8N5R6 958 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 PDCD7Q8N8D1 485 aaKnown RBP13.14□□□□□ -0.31
LINC00540-203ENST00000631321 NRG4Q8WWG1 115 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 CDKL2Q92772 493 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 NT5C3BQ969T7 300 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 FAM136AQ96C01 138 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 LGMNQ99538 433 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 FAM167BQ9BTA0 163 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 OSBPL1AQ9BXW6 950 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 ZNF212Q9UDV6 495 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.14□□□□□ -0.31
LINC00540-203ENST00000631321 H3BRJ5 948 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 CAPN9O14815 690 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 XPO1O14980 1071 aaKnown RBP13.14□□□□□ -0.31
LINC00540-203ENST00000631321 PLIN3O60664 434 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 TBX10O75333 385 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 DAB1O75553 588 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 TM7SF2O76062 418 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 STK10O94804 968 aaKnown RBP13.14□□□□□ -0.31
LINC00540-203ENST00000631321 TOP3BO95985 862 aaKnown RBP13.14□□□□□ -0.31
LINC00540-203ENST00000631321 CD4P01730 458 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 FGF3P11487 239 aaPredicted RBP13.14□□□□□ -0.31
LINC00540-203ENST00000631321 PAX7P23759 505 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 LMO2P25791 158 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 TUBB3Q13509 450 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 PDE1CQ14123 709 aaPredicted RBP13.14□□□□□ -0.31
LINC00540-203ENST00000631321 INSCQ1MX18 579 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 MUM1Q2TAK8 710 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 OTUD1Q5VV17 481 aaPredicted RBP13.14□□□□□ -0.31
LINC00540-203ENST00000631321 CAPRIN2Q6IMN6 1127 aaKnown RBP13.14□□□□□ -0.31
LINC00540-203ENST00000631321 CATSPER4Q7RTX7 472 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 UNC5BQ8IZJ1 945 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 GPRC5AQ8NFJ5 357 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 ZNF778Q96MU6 729 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 TSPAN18Q96SJ8 248 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 MARCOQ9UEW3 520 aaPredicted RBP13.14□□□□□ -0.31
LINC00540-203ENST00000631321 DICER1Q9UPY3 1922 aaKnown RBP13.14□□□□□ -0.31
LINC00540-203ENST00000631321 RRN3P2A6NIE6 340 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 RNF103O00237 685 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 SPTLC1O15269 473 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 RECQL4O94761 1208 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 SNAI1O95863 264 aaPredicted RBP13.13□□□□□ -0.31
LINC00540-203ENST00000631321 MMP3P08254 477 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 PDGFRBP09619 1106 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 CPA2P48052 419 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 CCNA1P78396 465 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 AP1B1Q10567 949 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 TRMT5Q32P41 509 aaKnown RBP13.13□□□□□ -0.31
LINC00540-203ENST00000631321 N4BP2L1Q5TBK1 243 aaPredicted RBP13.13□□□□□ -0.31
LINC00540-203ENST00000631321 LRRC74BQ6ZQY2 392 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 FBXO27Q8NI29 283 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 SLC2A14Q8TDB8 520 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 MICAL1Q8TDZ2 1067 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 STMN2Q93045 179 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 P2RY11Q96G91 374 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 ZNF560Q96MR9 790 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 DNAI2Q9GZS0 605 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 IGSF9Q9P2J2 1179 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 DCDC2Q9UHG0 476 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 HES2Q9Y543 173 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 NR2E3Q9Y5X4 410 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 UNCXA6NJT0 531 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 KPNA7A9QM74 516 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 TPP1O14773 563 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 ZNF189O75820 626 aaPredicted RBP13.13□□□□□ -0.31
LINC00540-203ENST00000631321 SERPINE1P05121 402 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 PRKCGP05129 697 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 KITP10721 976 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 MGAT1P26572 445 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 GJA5P36382 358 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 PNPLA4P41247 253 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 PAFAH1B3Q15102 231 aaKnown RBP13.13□□□□□ -0.31
LINC00540-203ENST00000631321 PDK1Q15118 436 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 DUSP28Q4G0W2 176 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 XKR4Q5GH76 650 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 GLRA4Q5JXX5 417 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 RABGAP1LQ5R372 815 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 ZCCHC23Q6ZST2 131 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 FAM131BQ86XD5 332 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 SCUBE1Q8IWY4 988 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 DEFB106AQ8N104 65 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 PIWIL2Q8TC59 973 aaKnown RBP13.13□□□□□ -0.31
LINC00540-203ENST00000631321 RNF139Q8WU17 664 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 ATP2A3Q93084 1043 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 ISL2Q96A47 359 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 SNX25Q9H3E2 840 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 NXF3Q9H4D5 531 aaKnown RBP13.13□□□□□ -0.31
LINC00540-203ENST00000631321 LRCH1Q9Y2L9 728 aa13.13□□□□□ -0.31
LINC00540-203ENST00000631321 PROCP04070 461 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 KCNE1P15382 129 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 SMPD1P17405 629 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 TKTP29401 623 aaKnown RBP13.12□□□□□ -0.31
LINC00540-203ENST00000631321 SULT1E1P49888 294 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 CRADDP78560 199 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 SNAPC2Q13487 334 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 THOC5Q13769 683 aaKnown RBP13.12□□□□□ -0.31
LINC00540-203ENST00000631321 TTLL12Q14166 644 aaPredicted RBP13.12□□□□□ -0.31
LINC00540-203ENST00000631321 FRG1Q14331 258 aaKnown RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms