RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 TBCBQ99426 244 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 NPY6RQ99463 290 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 DDX50Q9BQ39 737 aaKnown RBP18.78■□□□□ 0.6
CLN3-239ENST00000628023 BBS2Q9BXC9 721 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 EPC1Q9H2F5 836 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 PARVAQ9NVD7 372 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 CNOT8Q9UFF9 292 aaKnown RBP18.78■□□□□ 0.6
CLN3-239ENST00000628023 SLC12A6Q9UHW9 1150 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 SMG5Q9UPR3 1016 aaKnown RBP18.78■□□□□ 0.6
CLN3-239ENST00000628023 PAXBP1Q9Y5B6 917 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 SIGLEC16A6NMB1 481 aa18.77■□□□□ 0.6
CLN3-239ENST00000628023 NEDD8-MDP1E9PL57 170 aa18.77■□□□□ 0.6
CLN3-239ENST00000628023 LILRB5O75023 590 aa18.77■□□□□ 0.6
CLN3-239ENST00000628023 CYBBP04839 570 aa18.77■□□□□ 0.6
CLN3-239ENST00000628023 PDGFRAP16234 1089 aa18.77■□□□□ 0.6
CLN3-239ENST00000628023 ABCB4P21439 1286 aa18.77■□□□□ 0.6
CLN3-239ENST00000628023 CXCL12P48061 93 aa18.77■□□□□ 0.6
CLN3-239ENST00000628023 ATP11AP98196 1134 aa18.77■□□□□ 0.6
CLN3-239ENST00000628023 GFPT1Q06210 699 aaPredicted RBP18.77■□□□□ 0.6
CLN3-239ENST00000628023 MAPK8IP2Q13387 824 aaPredicted RBP18.77■□□□□ 0.6
CLN3-239ENST00000628023 PUM1Q14671 1186 aaKnown RBP eCLIP18.77■□□□□ 0.6
CLN3-239ENST00000628023 PON2Q15165 354 aa18.77■□□□□ 0.6
CLN3-239ENST00000628023 CDO1Q16878 200 aa18.77■□□□□ 0.6
CLN3-239ENST00000628023 ALKBH5Q6P6C2 394 aaKnown RBP18.77■□□□□ 0.6
CLN3-239ENST00000628023 TXNDC11Q6PKC3 985 aa18.77■□□□□ 0.6
CLN3-239ENST00000628023 ATP6V0D2Q8N8Y2 350 aa18.77■□□□□ 0.6
CLN3-239ENST00000628023 TC2NQ8N9U0 490 aa18.77■□□□□ 0.6
CLN3-239ENST00000628023 SPC24Q8NBT2 197 aa18.77■□□□□ 0.6
CLN3-239ENST00000628023 RMDN1Q96DB5 314 aa18.77■□□□□ 0.6
CLN3-239ENST00000628023 SLC39A13Q96H72 371 aa18.77■□□□□ 0.6
CLN3-239ENST00000628023 ISCUQ9H1K1 167 aa18.77■□□□□ 0.6
CLN3-239ENST00000628023 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.77■□□□□ 0.6
CLN3-239ENST00000628023 MYO1AQ9UBC5 1043 aa18.77■□□□□ 0.6
CLN3-239ENST00000628023 FRYLO94915 3013 aa18.76■□□□□ 0.59
CLN3-239ENST00000628023 GOLGA6L3A6NEY3 463 aa18.76■□□□□ 0.59
CLN3-239ENST00000628023 TRDMT1O14717 391 aaKnown RBP18.76■□□□□ 0.59
CLN3-239ENST00000628023 ACSL4O60488 711 aa18.76■□□□□ 0.59
CLN3-239ENST00000628023 F9P00740 461 aa18.76■□□□□ 0.59
CLN3-239ENST00000628023 CHRNB1P11230 501 aa18.76■□□□□ 0.59
CLN3-239ENST00000628023 TFE3P19532 575 aaPredicted RBP18.76■□□□□ 0.59
CLN3-239ENST00000628023 GPD1P21695 349 aa18.76■□□□□ 0.59
CLN3-239ENST00000628023 SDHBP21912 280 aa18.76■□□□□ 0.59
CLN3-239ENST00000628023 RDXP35241 583 aaKnown RBP18.76■□□□□ 0.59
CLN3-239ENST00000628023 SLC18A3Q16572 532 aa18.76■□□□□ 0.59
CLN3-239ENST00000628023 DGKKQ5KSL6 1271 aa18.76■□□□□ 0.59
CLN3-239ENST00000628023 ADGRF1Q5T601 910 aa18.76■□□□□ 0.59
CLN3-239ENST00000628023 TRNP1Q6NT89 227 aa18.76■□□□□ 0.59
CLN3-239ENST00000628023 DGLUCYQ7Z3D6 616 aa18.76■□□□□ 0.59
CLN3-239ENST00000628023 CPXM2Q8N436 756 aa18.76■□□□□ 0.59
CLN3-239ENST00000628023 SPEM1Q8N4L4 309 aa18.76■□□□□ 0.59
CLN3-239ENST00000628023 NAT16Q8N8M0 369 aa18.76■□□□□ 0.59
CLN3-239ENST00000628023 CD101Q93033 1021 aa18.76■□□□□ 0.59
CLN3-239ENST00000628023 XPO6Q96QU8 1125 aaKnown RBP18.76■□□□□ 0.59
CLN3-239ENST00000628023 CHP1Q99653 195 aa18.76■□□□□ 0.59
CLN3-239ENST00000628023 P2RY13Q9BPV8 354 aa18.76■□□□□ 0.59
CLN3-239ENST00000628023 NHEJ1Q9H9Q4 299 aaPredicted RBP18.76■□□□□ 0.59
CLN3-239ENST00000628023 TMEM51Q9NW97 253 aa18.76■□□□□ 0.59
CLN3-239ENST00000628023 GMEB2Q9UKD1 530 aa18.76■□□□□ 0.59
CLN3-239ENST00000628023 SCINQ9Y6U3 715 aa18.76■□□□□ 0.59
CLN3-239ENST00000628023 GPR179Q6PRD1 2367 aa18.75■□□□□ 0.59
CLN3-239ENST00000628023 TYW5A2RUC4 315 aaKnown RBP18.75■□□□□ 0.59
CLN3-239ENST00000628023 C2CD4BA6NLJ0 364 aa18.75■□□□□ 0.59
CLN3-239ENST00000628023 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.75■□□□□ 0.59
CLN3-239ENST00000628023 HOXC11O43248 304 aaPredicted RBP18.75■□□□□ 0.59
CLN3-239ENST00000628023 TSPAN3O60637 253 aa18.75■□□□□ 0.59
CLN3-239ENST00000628023 TYRP14679 529 aa18.75■□□□□ 0.59
CLN3-239ENST00000628023 RFC1P35251 1148 aaPredicted RBP18.75■□□□□ 0.59
CLN3-239ENST00000628023 GRSF1Q12849 480 aaKnown RBP eCLIP18.75■□□□□ 0.59
CLN3-239ENST00000628023 MAMLD1Q13495 774 aa18.75■□□□□ 0.59
CLN3-239ENST00000628023 C15orf59Q2T9L4 293 aaPredicted RBP18.75■□□□□ 0.59
CLN3-239ENST00000628023 OTUD1Q5VV17 481 aaPredicted RBP18.75■□□□□ 0.59
CLN3-239ENST00000628023 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.75■□□□□ 0.59
CLN3-239ENST00000628023 CHSY1Q86X52 802 aa18.75■□□□□ 0.59
CLN3-239ENST00000628023 DDI1Q8WTU0 396 aa18.75■□□□□ 0.59
CLN3-239ENST00000628023 NT5C3BQ969T7 300 aa18.75■□□□□ 0.59
CLN3-239ENST00000628023 AZIN2Q96A70 460 aa18.75■□□□□ 0.59
CLN3-239ENST00000628023 BTN2A3PQ96KV6 586 aa18.75■□□□□ 0.59
CLN3-239ENST00000628023 WDCPQ9H6R7 721 aa18.75■□□□□ 0.59
CLN3-239ENST00000628023 MRPL47Q9HD33 250 aaKnown RBP18.75■□□□□ 0.59
CLN3-239ENST00000628023 PIGVQ9NUD9 493 aa18.75■□□□□ 0.59
CLN3-239ENST00000628023 MARK1Q9P0L2 795 aa18.75■□□□□ 0.59
CLN3-239ENST00000628023 TCRBV5S1A1TA0A578 114 aa18.74■□□□□ 0.59
CLN3-239ENST00000628023 PTPN9P43378 593 aa18.74■□□□□ 0.59
CLN3-239ENST00000628023 KDSRQ06136 332 aa18.74■□□□□ 0.59
CLN3-239ENST00000628023 MTA1Q13330 715 aa18.74■□□□□ 0.59
CLN3-239ENST00000628023 CCDC14Q49A88 953 aa18.74■□□□□ 0.59
CLN3-239ENST00000628023 MPPE1Q53F39 396 aa18.74■□□□□ 0.59
CLN3-239ENST00000628023 BRMS1LQ5PSV4 323 aa18.74■□□□□ 0.59
CLN3-239ENST00000628023 RAP1GAP2Q684P5 730 aa18.74■□□□□ 0.59
CLN3-239ENST00000628023 NAIF1Q69YI7 327 aaPredicted RBP18.74■□□□□ 0.59
CLN3-239ENST00000628023 PLEKHA7Q6IQ23 1121 aa18.74■□□□□ 0.59
CLN3-239ENST00000628023 FAM217AQ8IXS0 508 aa18.74■□□□□ 0.59
CLN3-239ENST00000628023 FAM172AQ8WUF8 416 aa18.74■□□□□ 0.59
CLN3-239ENST00000628023 CHFRQ96EP1 664 aa18.74■□□□□ 0.59
CLN3-239ENST00000628023 PGAP3Q96FM1 320 aaPredicted RBP18.74■□□□□ 0.59
CLN3-239ENST00000628023 PANX2Q96RD6 677 aa18.74■□□□□ 0.59
CLN3-239ENST00000628023 THAP2Q9H0W7 228 aa18.74■□□□□ 0.59
CLN3-239ENST00000628023 DNAJC17Q9NVM6 304 aaKnown RBP18.74■□□□□ 0.59
CLN3-239ENST00000628023 PLK2Q9NYY3 685 aa18.74■□□□□ 0.59
CLN3-239ENST00000628023 CALCOCO1Q9P1Z2 691 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms