RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 ARL6IP6Q8N6S5 226 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 KBTBD7Q8WVZ9 684 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 C7orf26Q96N11 449 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 VPS35Q96QK1 796 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 DHRS9Q9BPW9 319 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 RAB34Q9BZG1 259 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 SLC38A10Q9HBR0 1119 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 STMN3Q9NZ72 180 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 DNAJC12Q9UKB3 198 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 STRIP2Q9ULQ0 834 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 MROH5Q6ZUA9 1318 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 LOC100653049A0A140TA62 436 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 TCRBV5S4A2TA0A5A2 114 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 FAM172BPA6NC97 362 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 NOP56O00567 594 aaKnown RBP8.13□□□□□ -1.11
VPS11-209ENST00000622309 KRT34O76011 436 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 IL1BP01584 269 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 KRT18P05783 430 aaKnown RBP8.13□□□□□ -1.11
VPS11-209ENST00000622309 CAPN1P07384 714 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 UQCRFS1P1P0C7P4 283 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 PRKCAP17252 672 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 KLRK1P26718 216 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 P2RX3P56373 397 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 FLOT2Q14254 428 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 ZNF846Q147U1 533 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 KIAA1614Q5VZ46 1190 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 TMEM26Q6ZUK4 368 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 RTL10Q7L3V2 364 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 HEATR3Q7Z4Q2 680 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 ZNF786Q8N393 782 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 CELF1Q92879 486 aaKnown RBP8.13□□□□□ -1.11
VPS11-209ENST00000622309 SLC5A5Q92911 643 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 CMTM5Q96DZ9 223 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 SERPINI1Q99574 410 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 OSBPL11Q9BXB4 747 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 B3GNT4Q9C0J1 378 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 HOXD1Q9GZZ0 328 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 SH3GLB2Q9NR46 395 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 PRKAG2Q9UGJ0 569 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 ZNF229Q9UJW7 825 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 ITGA11Q9UKX5 1188 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 MYH14Q7Z406 1995 aaKnown RBP8.13□□□□□ -1.11
VPS11-209ENST00000622309 HAT1O14929 419 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 TBX3O15119 743 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 KCNJ13O60928 360 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 BPNT1O95861 308 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 CCNA2P20248 432 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 FGFR2P21802 821 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 ACAT1P24752 427 aaKnown RBP8.13□□□□□ -1.11
VPS11-209ENST00000622309 PRAMEP78395 509 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 TXNL4AP83876 142 aaKnown RBP8.13□□□□□ -1.11
VPS11-209ENST00000622309 POU5F1BQ06416 359 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 NME3Q13232 169 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 FASTKD3Q14CZ7 662 aaKnown RBP8.13□□□□□ -1.11
VPS11-209ENST00000622309 MAPRE1Q15691 268 aaKnown RBP8.13□□□□□ -1.11
VPS11-209ENST00000622309 ATAD3BQ5T9A4 648 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 ZNF746Q6NUN9 644 aaPredicted RBP8.13□□□□□ -1.11
VPS11-209ENST00000622309 PPP4R4Q6NUP7 873 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 DPY19L2P1Q6NXN4 242 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 AMIGO3Q86WK7 504 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 GALNT6Q8NCL4 622 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 E2F7Q96AV8 911 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.13□□□□□ -1.11
VPS11-209ENST00000622309 CCDC88AQ3V6T2 1871 aa8.13□□□□□ -1.11
VPS11-209ENST00000622309 CCDC195A0A1B0GUA6 201 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 GOLGA8JA6NMD2 632 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 MSI1O43347 362 aaKnown RBP8.12□□□□□ -1.11
VPS11-209ENST00000622309 NUAK1O60285 661 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 MX2P20592 715 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 CES1P23141 567 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 NMT1P30419 496 aaKnown RBP8.12□□□□□ -1.11
VPS11-209ENST00000622309 COPZ1P61923 177 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 CTBSQ01459 385 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 BST1Q10588 318 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 STX3Q13277 289 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 CCDC14Q49A88 953 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 PPP6R3Q5H9R7 873 aaPredicted RBP8.12□□□□□ -1.11
VPS11-209ENST00000622309 FAM47AQ5JRC9 791 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 TTC33Q6PID6 262 aaPredicted RBP8.12□□□□□ -1.11
VPS11-209ENST00000622309 SLC51BQ86UW2 128 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 PGBD4Q96DM1 585 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 PAFAH2Q99487 392 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 RUBCNLQ9H714 662 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 RMND5AQ9H871 391 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 NEK6Q9HC98 313 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 HMG20AQ9NP66 347 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 SIX2Q9NPC8 291 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 TAF1P21675 1872 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 CLDN25C9JDP6 229 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 MAN1A2O60476 641 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 NMT2O60551 498 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 FKBP9O95302 570 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 KRT8P05787 483 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 CCDC159P0C7I6 412 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 BTF3P20290 206 aaKnown RBP8.12□□□□□ -1.11
VPS11-209ENST00000622309 STAT3P40763 770 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 DNASE1L3Q13609 305 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 CARTPTQ16568 116 aa8.12□□□□□ -1.11
VPS11-209ENST00000622309 NFE2Q16621 373 aaPredicted RBP8.12□□□□□ -1.11
VPS11-209ENST00000622309 KLHL38Q2WGJ6 581 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms