RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 C2orf27AQ580R0 203 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 MS4A13Q5J8X5 152 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 ADGRF1Q5T601 910 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 TMEM215Q68D42 235 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 BEND5Q7L4P6 421 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 ARFGAP1Q8N6T3 406 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 C3orf20Q8ND61 904 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 OR52K2Q8NGK3 314 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 SORCS1Q8WY21 1168 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 SYN2Q92777 582 aaPredicted RBP14□□□□□ -0.17
LINC00540-202ENST00000616974 CD101Q93033 1021 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 IGSF8Q969P0 613 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 ACOX2Q99424 681 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 DNAJC17Q9NVM6 304 aaKnown RBP14□□□□□ -0.17
LINC00540-202ENST00000616974 STIM2Q9P246 746 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 STOML2Q9UJZ1 356 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 SLC9A3R1O14745 358 aaPredicted RBP13.99□□□□□ -0.17
LINC00540-202ENST00000616974 HOXC11O43248 304 aaPredicted RBP13.99□□□□□ -0.17
LINC00540-202ENST00000616974 CCP110O43303 1012 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 ADH1CP00326 375 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 PENKP01210 267 aaPredicted RBP13.99□□□□□ -0.17
LINC00540-202ENST00000616974 CISD3P0C7P0 127 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 CLCN5P51795 746 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 HDAC4P56524 1084 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 RING1Q06587 406 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 GEN1Q17RS7 908 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 SLC25A52Q3SY17 297 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 FSCBQ5H9T9 825 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 ZDHHC17Q8IUH5 632 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 CCDC185Q8N715 623 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 OR8K1Q8NGG5 319 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 DDI1Q8WTU0 396 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 CLDN23Q96B33 292 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 SHDQ96IW2 340 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 PRMT1Q99873 361 aaKnown RBP13.99□□□□□ -0.17
LINC00540-202ENST00000616974 SIK2Q9H0K1 926 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 HS3ST4Q9Y661 456 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 CEP250Q9BV73 2442 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 DOCK9Q9BZ29 2069 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 WASH3PC4AMC7 463 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 FAM72CH0Y354 149 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 H0Y858 1186 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 KAT7O95251 611 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 DMWDQ09019 674 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 TCF15Q12870 199 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 FAM72AQ5TYM5 149 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 SMYD5Q6GMV2 418 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 FAM72DQ6L9T8 149 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 FAM72BQ86X60 149 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 PYROXD2Q8N2H3 581 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 ZNF653Q96CK0 615 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 MRFAP1L1Q96HT8 127 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 PHOX2BQ99453 314 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 SELENOOQ9BVL4 669 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 TKTL2Q9H0I9 626 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 ISCUQ9H1K1 167 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 ARHGEF4Q9NR80 690 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 MARK1Q9P0L2 795 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 VANGL2Q9ULK5 521 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 MUC22E2RYF6 1773 aaPredicted RBP13.99□□□□□ -0.17
LINC00540-202ENST00000616974 CKAP5Q14008 2032 aa13.99□□□□□ -0.17
LINC00540-202ENST00000616974 SIGLEC16A6NMB1 481 aa13.98□□□□□ -0.17
LINC00540-202ENST00000616974 MAN2B1O00754 1011 aa13.98□□□□□ -0.17
LINC00540-202ENST00000616974 CACNG3O60359 315 aa13.98□□□□□ -0.17
LINC00540-202ENST00000616974 PAGE1O75459 146 aa13.98□□□□□ -0.17
LINC00540-202ENST00000616974 CNTN5O94779 1100 aa13.98□□□□□ -0.17
LINC00540-202ENST00000616974 CALB1P05937 261 aa13.98□□□□□ -0.17
LINC00540-202ENST00000616974 CCDC172P0C7W6 258 aa13.98□□□□□ -0.17
LINC00540-202ENST00000616974 HLA-FP30511 346 aa13.98□□□□□ -0.17
LINC00540-202ENST00000616974 PXNP49023 591 aaPredicted RBP13.98□□□□□ -0.17
LINC00540-202ENST00000616974 CXCR3P49682 368 aa13.98□□□□□ -0.17
LINC00540-202ENST00000616974 GSCP56915 257 aaPredicted RBP13.98□□□□□ -0.17
LINC00540-202ENST00000616974 SATB1Q01826 763 aa13.98□□□□□ -0.17
LINC00540-202ENST00000616974 GAD2Q05329 585 aa13.98□□□□□ -0.17
LINC00540-202ENST00000616974 DEUP1Q05D60 604 aa13.98□□□□□ -0.17
LINC00540-202ENST00000616974 NUGGCQ68CJ6 796 aa13.98□□□□□ -0.17
LINC00540-202ENST00000616974 PLEKHA7Q6IQ23 1121 aa13.98□□□□□ -0.17
LINC00540-202ENST00000616974 DNAJC24Q6P3W2 148 aa13.98□□□□□ -0.17
LINC00540-202ENST00000616974 ALKBH5Q6P6C2 394 aaKnown RBP13.98□□□□□ -0.17
LINC00540-202ENST00000616974 RPLP0P6Q8NHW5 317 aa13.98□□□□□ -0.17
LINC00540-202ENST00000616974 FAM172AQ8WUF8 416 aa13.98□□□□□ -0.17
LINC00540-202ENST00000616974 RNF34Q969K3 372 aa13.98□□□□□ -0.17
LINC00540-202ENST00000616974 OTUB2Q96DC9 234 aa13.98□□□□□ -0.17
LINC00540-202ENST00000616974 FAM86C1Q9NVL1 165 aa13.98□□□□□ -0.17
LINC00540-202ENST00000616974 CNOT8Q9UFF9 292 aaKnown RBP13.98□□□□□ -0.17
LINC00540-202ENST00000616974 AKR1B15C9JRZ8 316 aaPredicted RBP13.97□□□□□ -0.17
LINC00540-202ENST00000616974 TBL1XO60907 577 aa13.97□□□□□ -0.17
LINC00540-202ENST00000616974 RTN2O75298 545 aa13.97□□□□□ -0.17
LINC00540-202ENST00000616974 COL9A1P20849 921 aa13.97□□□□□ -0.17
LINC00540-202ENST00000616974 TACR2P21452 398 aa13.97□□□□□ -0.17
LINC00540-202ENST00000616974 CD70P32970 193 aa13.97□□□□□ -0.17
LINC00540-202ENST00000616974 WASP42768 502 aa13.97□□□□□ -0.17
LINC00540-202ENST00000616974 CCDC122Q5T0U0 273 aa13.97□□□□□ -0.17
LINC00540-202ENST00000616974 FBXL22Q6P050 247 aa13.97□□□□□ -0.17
LINC00540-202ENST00000616974 LGI2Q8N0V4 545 aa13.97□□□□□ -0.17
LINC00540-202ENST00000616974 CCDC33Q8N5R6 958 aa13.97□□□□□ -0.17
LINC00540-202ENST00000616974 DCLK3Q9C098 648 aa13.97□□□□□ -0.17
LINC00540-202ENST00000616974 NHEJ1Q9H9Q4 299 aaPredicted RBP13.97□□□□□ -0.17
LINC00540-202ENST00000616974 GZMAP12544 262 aa13.97□□□□□ -0.17
LINC00540-202ENST00000616974 TIE1P35590 1138 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms