RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 CIPCQ9C0C6 399 aa19.77■□□□□ 0.76
CDX1-202ENST00000616154 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.77■□□□□ 0.76
CDX1-202ENST00000616154 MEI4A8MW99 385 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 KCNJ18B7U540 433 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 H0Y626 953 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 O00370 1275 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 TRIM16O95361 564 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 VDRP11473 427 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 NCAM1P13591 858 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 CD19P15391 556 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 PRKCHP24723 683 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 MAOBP27338 520 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 HOXD9P28356 352 aaPredicted RBP19.76■□□□□ 0.75
CDX1-202ENST00000616154 HARS2P49590 506 aaKnown RBP19.76■□□□□ 0.75
CDX1-202ENST00000616154 TPMTP51580 245 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 COPAP53621 1224 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 ZNF445P59923 1031 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 PKDCCQ504Y2 493 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 MPPE1Q53F39 396 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 TMEM215Q68D42 235 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 SMYD5Q6GMV2 418 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 IRF2BP1Q8IU81 584 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 EHBP1Q8NDI1 1231 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 KCTD13Q8WZ19 329 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 PRCCQ92733 491 aaPredicted RBP19.76■□□□□ 0.75
CDX1-202ENST00000616154 GPR174Q9BXC1 333 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 ZDHHC5Q9C0B5 715 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 STOML2Q9UJZ1 356 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 CNTN6Q9UQ52 1028 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 PKD1L2Q7Z442 2459 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 A0A1B0GTW7 788 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 YJEFN3A6XGL0 299 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 E7ENQ6 273 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 LATS1O95835 1130 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 SETSIPP0DME0 302 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 FAM193AP78312 1265 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 LRMPQ12912 555 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 GRIK2Q13002 908 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 BSPRYQ5W0U4 402 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 SIX6OS1Q8N1H7 587 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 SCML4Q8N228 414 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 RNF139Q8WU17 664 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 SORCS1Q8WY21 1168 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 FUCA2Q9BTY2 467 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 CNGB3Q9NQW8 809 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 KLK13Q9UKR3 277 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 MSRB2Q9Y3D2 182 aa19.76■□□□□ 0.75
CDX1-202ENST00000616154 EPHX1P07099 455 aa19.75■□□□□ 0.75
CDX1-202ENST00000616154 RDXP35241 583 aaKnown RBP19.75■□□□□ 0.75
CDX1-202ENST00000616154 NUMA1Q14980 2115 aa19.75■□□□□ 0.75
CDX1-202ENST00000616154 ZNF423Q2M1K9 1284 aa19.75■□□□□ 0.75
CDX1-202ENST00000616154 LCLAT1Q6UWP7 414 aa19.75■□□□□ 0.75
CDX1-202ENST00000616154 SERPINA13PQ6UXR4 307 aa19.75■□□□□ 0.75
CDX1-202ENST00000616154 PPM1KQ8N3J5 372 aa19.75■□□□□ 0.75
CDX1-202ENST00000616154 ZCCHC9Q8N567 271 aaKnown RBP19.75■□□□□ 0.75
CDX1-202ENST00000616154 UBA3Q8TBC4 463 aa19.75■□□□□ 0.75
CDX1-202ENST00000616154 WFIKKN2Q8TEU8 576 aa19.75■□□□□ 0.75
CDX1-202ENST00000616154 EDEM1Q92611 657 aa19.75■□□□□ 0.75
CDX1-202ENST00000616154 KAT5Q92993 513 aa19.75■□□□□ 0.75
CDX1-202ENST00000616154 ABCC13Q9NSE7 274 aa19.75■□□□□ 0.75
CDX1-202ENST00000616154 SFMBT1Q9UHJ3 866 aa19.75■□□□□ 0.75
CDX1-202ENST00000616154 METTL12A8MUP2 240 aa19.74■□□□□ 0.75
CDX1-202ENST00000616154 TSPAN3O60637 253 aa19.74■□□□□ 0.75
CDX1-202ENST00000616154 C7P10643 843 aa19.74■□□□□ 0.75
CDX1-202ENST00000616154 ACADMP11310 421 aa19.74■□□□□ 0.75
CDX1-202ENST00000616154 ERCC5P28715 1186 aaPredicted RBP19.74■□□□□ 0.75
CDX1-202ENST00000616154 HLA-FP30511 346 aa19.74■□□□□ 0.75
CDX1-202ENST00000616154 DAOAP59103 153 aa19.74■□□□□ 0.75
CDX1-202ENST00000616154 ARID5AQ03989 594 aa19.74■□□□□ 0.75
CDX1-202ENST00000616154 STILQ15468 1287 aa19.74■□□□□ 0.75
CDX1-202ENST00000616154 ADGRF1Q5T601 910 aa19.74■□□□□ 0.75
CDX1-202ENST00000616154 DCAF12L1Q5VU92 463 aa19.74■□□□□ 0.75
CDX1-202ENST00000616154 TMEM270Q6UE05 265 aa19.74■□□□□ 0.75
CDX1-202ENST00000616154 ARHGEF19Q8IW93 802 aa19.74■□□□□ 0.75
CDX1-202ENST00000616154 DDX51Q8N8A6 666 aaKnown RBP eCLIP19.74■□□□□ 0.75
CDX1-202ENST00000616154 OR2T3Q8NH03 318 aa19.74■□□□□ 0.75
CDX1-202ENST00000616154 TFAP2BQ92481 460 aa19.74■□□□□ 0.75
CDX1-202ENST00000616154 KREMEN1Q96MU8 473 aa19.74■□□□□ 0.75
CDX1-202ENST00000616154 ZSWIM1Q9BR11 485 aa19.74■□□□□ 0.75
CDX1-202ENST00000616154 NUP58Q9BVL2 599 aa19.74■□□□□ 0.75
CDX1-202ENST00000616154 INTS2Q9H0H0 1204 aaKnown RBP19.74■□□□□ 0.75
CDX1-202ENST00000616154 SPEGQ15772 3267 aa19.73■□□□□ 0.75
CDX1-202ENST00000616154 ZFYVE26Q68DK2 2539 aa19.73■□□□□ 0.75
CDX1-202ENST00000616154 GTPBP10A4D1E9 387 aaKnown RBP19.73■□□□□ 0.75
CDX1-202ENST00000616154 FAM221BA6H8Z2 402 aa19.73■□□□□ 0.75
CDX1-202ENST00000616154 RNF225M0QZC1 329 aaPredicted RBP19.73■□□□□ 0.75
CDX1-202ENST00000616154 SH3BP5O60239 455 aa19.73■□□□□ 0.75
CDX1-202ENST00000616154 CAMK2GQ13555 558 aaPredicted RBP19.73■□□□□ 0.75
CDX1-202ENST00000616154 CNGA2Q16280 664 aa19.73■□□□□ 0.75
CDX1-202ENST00000616154 DPCR1Q3MIW9 517 aa19.73■□□□□ 0.75
CDX1-202ENST00000616154 CT47A1Q5JQC4 288 aaPredicted RBP19.73■□□□□ 0.75
CDX1-202ENST00000616154 MSANTD2Q6P1R3 559 aa19.73■□□□□ 0.75
CDX1-202ENST00000616154 RAB44Q7Z6P3 723 aaPredicted RBP19.73■□□□□ 0.75
CDX1-202ENST00000616154 KIAA0907Q7Z7F0 614 aaPredicted RBP19.73■□□□□ 0.75
CDX1-202ENST00000616154 NAXDQ8IW45 347 aa19.73■□□□□ 0.75
CDX1-202ENST00000616154 ZCCHC14Q8WYQ9 949 aaKnown RBP19.73■□□□□ 0.75
CDX1-202ENST00000616154 TMA16Q96EY4 203 aaKnown RBP19.73■□□□□ 0.75
CDX1-202ENST00000616154 IRX2Q9BZI1 471 aaPredicted RBP19.73■□□□□ 0.75
CDX1-202ENST00000616154 PCED1AQ9H1Q7 454 aa19.73■□□□□ 0.75
CDX1-202ENST00000616154 TMEM245Q9H330 911 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms