RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 AKR1B10O60218 316 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 TSPAN3O60637 253 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 TULP3O75386 442 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 CYBBP04839 570 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 DCNP07585 359 aaKnown RBP17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 CHRNB1P11230 501 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 AVPR2P30518 371 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 ZNF143P52747 638 aaPredicted RBP17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 MESP2Q0VG99 397 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 GRSF1Q12849 480 aaKnown RBP eCLIP17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 MTA1Q13330 715 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 CDO1Q16878 200 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 MPPE1Q53F39 396 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 RAB6CQ53S08 254 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 BRMS1LQ5PSV4 323 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 PIK3R6Q5UE93 754 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 DDI1Q8WTU0 396 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 EXOC4Q96A65 974 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 TMA16Q96EY4 203 aaKnown RBP17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 XPO6Q96QU8 1125 aaKnown RBP17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 DDX50Q9BQ39 737 aaKnown RBP17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 RAB6CQ9H0N0 254 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 THAP2Q9H0W7 228 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 WDCPQ9H6R7 721 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 ANLNQ9NQW6 1124 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 PAXBP1Q9Y5B6 917 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 TMEM191CA6NGB0 347 aa17.15■□□□□ 0.34
CCDC28A-202ENST00000611852 I6L893 689 aaPredicted RBP17.15■□□□□ 0.34
CCDC28A-202ENST00000611852 DRD1P21728 446 aa17.15■□□□□ 0.34
CCDC28A-202ENST00000611852 MRE11P49959 708 aa17.15■□□□□ 0.34
CCDC28A-202ENST00000611852 SGSHP51688 502 aa17.15■□□□□ 0.34
CCDC28A-202ENST00000611852 OGDHQ02218 1023 aa17.15■□□□□ 0.34
CCDC28A-202ENST00000611852 MS4A13Q5J8X5 152 aa17.15■□□□□ 0.34
CCDC28A-202ENST00000611852 STRADAQ7RTN6 431 aa17.15■□□□□ 0.34
CCDC28A-202ENST00000611852 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.15■□□□□ 0.34
CCDC28A-202ENST00000611852 FAM131BQ86XD5 332 aa17.15■□□□□ 0.34
CCDC28A-202ENST00000611852 PHTF2Q8N3S3 785 aa17.15■□□□□ 0.34
CCDC28A-202ENST00000611852 EZH1Q92800 747 aaPredicted RBP17.15■□□□□ 0.34
CCDC28A-202ENST00000611852 MYEOVQ96EZ4 313 aa17.15■□□□□ 0.34
CCDC28A-202ENST00000611852 PANX2Q96RD6 677 aa17.15■□□□□ 0.34
CCDC28A-202ENST00000611852 PNKPQ96T60 521 aa17.15■□□□□ 0.34
CCDC28A-202ENST00000611852 PRMT1Q99873 361 aaKnown RBP17.15■□□□□ 0.34
CCDC28A-202ENST00000611852 IRX2Q9BZI1 471 aaPredicted RBP17.15■□□□□ 0.34
CCDC28A-202ENST00000611852 TKTL2Q9H0I9 626 aa17.15■□□□□ 0.34
CCDC28A-202ENST00000611852 LMAN1LQ9HAT1 526 aa17.15■□□□□ 0.34
CCDC28A-202ENST00000611852 RBM12Q9NTZ6 932 aaKnown RBP17.15■□□□□ 0.34
CCDC28A-202ENST00000611852 DEC1Q9P2X7 70 aa17.15■□□□□ 0.34
CCDC28A-202ENST00000611852 MYO1AQ9UBC5 1043 aa17.15■□□□□ 0.34
CCDC28A-202ENST00000611852 FBXO10Q9UK96 956 aa17.15■□□□□ 0.34
CCDC28A-202ENST00000611852 SCINQ9Y6U3 715 aa17.15■□□□□ 0.34
CCDC28A-202ENST00000611852 ZNF318Q5VUA4 2279 aa17.14■□□□□ 0.34
CCDC28A-202ENST00000611852 KIAA1549LQ6ZVL6 1849 aa17.14■□□□□ 0.33
CCDC28A-202ENST00000611852 KMT2EQ8IZD2 1858 aa17.14■□□□□ 0.33
CCDC28A-202ENST00000611852 PALM2-AKAP2B1ALY0 433 aaPredicted RBP17.14■□□□□ 0.33
CCDC28A-202ENST00000611852 TRIM24O15164 1050 aa17.14■□□□□ 0.33
CCDC28A-202ENST00000611852 CCP110O43303 1012 aa17.14■□□□□ 0.33
CCDC28A-202ENST00000611852 PAGE1O75459 146 aa17.14■□□□□ 0.33
CCDC28A-202ENST00000611852 EGFP01133 1207 aa17.14■□□□□ 0.33
CCDC28A-202ENST00000611852 TACR2P21452 398 aa17.14■□□□□ 0.33
CCDC28A-202ENST00000611852 HOXD9P28356 352 aaPredicted RBP17.14■□□□□ 0.33
CCDC28A-202ENST00000611852 RPS9P46781 194 aaKnown RBP17.14■□□□□ 0.33
CCDC28A-202ENST00000611852 GALCP54803 685 aa17.14■□□□□ 0.33
CCDC28A-202ENST00000611852 HDAC4P56524 1084 aa17.14■□□□□ 0.33
CCDC28A-202ENST00000611852 DGKKQ5KSL6 1271 aa17.14■□□□□ 0.33
CCDC28A-202ENST00000611852 RAP1GAP2Q684P5 730 aa17.14■□□□□ 0.33
CCDC28A-202ENST00000611852 FAM172AQ8WUF8 416 aa17.14■□□□□ 0.33
CCDC28A-202ENST00000611852 PRICKLE1Q96MT3 831 aaPredicted RBP17.14■□□□□ 0.33
CCDC28A-202ENST00000611852 CNPY3Q9BT09 278 aa17.14■□□□□ 0.33
CCDC28A-202ENST00000611852 GRPEL1Q9HAV7 217 aa17.14■□□□□ 0.33
CCDC28A-202ENST00000611852 MRPL47Q9HD33 250 aaKnown RBP17.14■□□□□ 0.33
CCDC28A-202ENST00000611852 SPTLC3Q9NUV7 552 aa17.14■□□□□ 0.33
CCDC28A-202ENST00000611852 DNAJC17Q9NVM6 304 aaKnown RBP17.14■□□□□ 0.33
CCDC28A-202ENST00000611852 IMPACTQ9P2X3 320 aa17.14■□□□□ 0.33
CCDC28A-202ENST00000611852 A0A0A0MRY4 1105 aa17.13■□□□□ 0.33
CCDC28A-202ENST00000611852 KAT7O95251 611 aa17.13■□□□□ 0.33
CCDC28A-202ENST00000611852 CYP1A2P05177 515 aa17.13■□□□□ 0.33
CCDC28A-202ENST00000611852 FECHP22830 423 aa17.13■□□□□ 0.33
CCDC28A-202ENST00000611852 KDSRQ06136 332 aa17.13■□□□□ 0.33
CCDC28A-202ENST00000611852 LRRC32Q14392 662 aa17.13■□□□□ 0.33
CCDC28A-202ENST00000611852 MPP7Q5T2T1 576 aa17.13■□□□□ 0.33
CCDC28A-202ENST00000611852 CHSY1Q86X52 802 aa17.13■□□□□ 0.33
CCDC28A-202ENST00000611852 LGI2Q8N0V4 545 aa17.13■□□□□ 0.33
CCDC28A-202ENST00000611852 SPC24Q8NBT2 197 aa17.13■□□□□ 0.33
CCDC28A-202ENST00000611852 PACSIN1Q9BY11 444 aa17.13■□□□□ 0.33
CCDC28A-202ENST00000611852 TRIM7Q9C029 511 aa17.13■□□□□ 0.33
CCDC28A-202ENST00000611852 ARHGEF4Q9NR80 690 aa17.13■□□□□ 0.33
CCDC28A-202ENST00000611852 TMPRSS4Q9NRS4 437 aa17.13■□□□□ 0.33
CCDC28A-202ENST00000611852 CLEC4EQ9ULY5 219 aa17.13■□□□□ 0.33
CCDC28A-202ENST00000611852 HS3ST4Q9Y661 456 aa17.13■□□□□ 0.33
CCDC28A-202ENST00000611852 CISD3P0C7P0 127 aa17.12■□□□□ 0.33
CCDC28A-202ENST00000611852 GRIA2P42262 883 aa17.12■□□□□ 0.33
CCDC28A-202ENST00000611852 DGKGP49619 791 aa17.12■□□□□ 0.33
CCDC28A-202ENST00000611852 ZNF252P-AS1Q0IIN9 211 aa17.12■□□□□ 0.33
CCDC28A-202ENST00000611852 AUHQ13825 339 aaKnown RBP17.12■□□□□ 0.33
CCDC28A-202ENST00000611852 RNF43Q68DV7 783 aa17.12■□□□□ 0.33
CCDC28A-202ENST00000611852 GRAMD4Q6IC98 578 aa17.12■□□□□ 0.33
CCDC28A-202ENST00000611852 SFTPA1Q8IWL2 248 aa17.12■□□□□ 0.33
CCDC28A-202ENST00000611852 SYNPOQ8N3V7 929 aa17.12■□□□□ 0.33
CCDC28A-202ENST00000611852 HJURPQ8NCD3 748 aaPredicted RBP17.12■□□□□ 0.33
CCDC28A-202ENST00000611852 FNIP1Q8TF40 1166 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms