RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 GTF2H1P32780 548 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 NUDT1P36639 197 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 ASPAP45381 313 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 YWHAEP62258 255 aaKnown RBP6.58□□□□□ -1.36
CUX1-220ENST00000607092 EHHADHQ08426 723 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 CYP4F3Q08477 520 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 EFEMP1Q12805 493 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 ZNF234Q14588 700 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 GEN1Q17RS7 908 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 KIF19Q2TAC6 998 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 KMT5BQ4FZB7 885 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 FNDC3BQ53EP0 1204 aaKnown RBP6.58□□□□□ -1.36
CUX1-220ENST00000607092 HS1BP3Q53T59 392 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 ZNF776Q68DI1 518 aaPredicted RBP6.58□□□□□ -1.36
CUX1-220ENST00000607092 SV2AQ7L0J3 742 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 SLCO6A1Q86UG4 719 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 FAM217AQ8IXS0 508 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 CACTIN-AS1Q8N1I8 211 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 KDM1BQ8NB78 822 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 ZMIZ2Q8NF64 920 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 MDM1Q8TC05 714 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 HNRNPLLQ8WVV9 542 aaKnown RBP6.58□□□□□ -1.36
CUX1-220ENST00000607092 SNX19Q92543 992 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 BHMTQ93088 406 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 PIWIL1Q96J94 861 aaKnown RBP6.58□□□□□ -1.36
CUX1-220ENST00000607092 LRIG1Q96JA1 1093 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 SLC39A2Q9NP94 309 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 MARCH2Q9P0N8 246 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 CFAP45Q9UL16 551 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 AGO1Q9UL18 857 aaKnown RBP6.58□□□□□ -1.36
CUX1-220ENST00000607092 ANKRD6Q9Y2G4 727 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 FNDC3AQ9Y2H6 1198 aaKnown RBP6.58□□□□□ -1.36
CUX1-220ENST00000607092 ADAMTS20P59510 1910 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 CEP192Q8TEP8 1941 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 A0A087X0B3 334 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 A0A1B0GVT2 93 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 KCNJ18B7U540 433 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 WASH3PC4AMC7 463 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 VILLO15195 856 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 POLR2DO15514 142 aaKnown RBP6.57□□□□□ -1.36
CUX1-220ENST00000607092 MOCS3O95396 460 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 VNN1O95497 513 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 ZBED1O96006 694 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 NR3C1P04150 777 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 ATXN1LP0C7T5 689 aaKnown RBP6.57□□□□□ -1.36
CUX1-220ENST00000607092 JUPP14923 745 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 POLR2EP19388 210 aaKnown RBP6.57□□□□□ -1.36
CUX1-220ENST00000607092 SLC11A2P49281 568 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 CSNK1EP49674 416 aaKnown RBP6.57□□□□□ -1.36
CUX1-220ENST00000607092 VAMP7P51809 220 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 COPAP53621 1224 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 UCNP55089 124 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 YWHAGP61981 247 aaKnown RBP eCLIP6.57□□□□□ -1.36
CUX1-220ENST00000607092 OVGP1Q12889 678 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 TRIP4Q15650 581 aaPredicted RBP6.57□□□□□ -1.36
CUX1-220ENST00000607092 PTPRNQ16849 979 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 ADGRF1Q5T601 910 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 NUGGCQ68CJ6 796 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 SCARA3Q6AZY7 606 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 DENND1CQ8IV53 801 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 UNC45BQ8IWX7 931 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 DDX51Q8N8A6 666 aaKnown RBP eCLIP6.57□□□□□ -1.362e-6■■■■■ 29.2
CUX1-220ENST00000607092 C12orf29Q8N999 325 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 C1orf216Q8TAB5 229 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 HPS3Q969F9 1004 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 JAKMIP2Q96AA8 810 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 TMA16Q96EY4 203 aaKnown RBP6.57□□□□□ -1.36
CUX1-220ENST00000607092 IPO9Q96P70 1041 aaKnown RBP6.57□□□□□ -1.36
CUX1-220ENST00000607092 PPP1R9BQ96SB3 815 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 ELF4Q99607 663 aaPredicted RBP6.57□□□□□ -1.36
CUX1-220ENST00000607092 TRIM62Q9BVG3 475 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 NRSN2Q9GZP1 204 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 GZF1Q9H116 711 aaPredicted RBP6.57□□□□□ -1.36
CUX1-220ENST00000607092 NMUR1Q9HB89 426 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 LRRC4Q9HBW1 653 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 TM9SF3Q9HD45 589 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 GDF3Q9NR23 364 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 ABCC13Q9NSE7 274 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 EVA1BQ9NVM1 165 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 DMAC2Q9NW81 257 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 PLK2Q9NYY3 685 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 HESX1Q9UBX0 185 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 STOML2Q9UJZ1 356 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 KIAA1257Q9ULG3 409 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.57□□□□□ -1.36
CUX1-220ENST00000607092 MTMR6Q9Y217 621 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 TRAF3IP3Q9Y228 551 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 SNX11Q9Y5W9 270 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 TLN1Q9Y490 2541 aaKnown RBP6.57□□□□□ -1.36
CUX1-220ENST00000607092 PTPN13Q12923 2485 aa6.57□□□□□ -1.36
CUX1-220ENST00000607092 A0A1B0GTQ1 180 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 TEX51A0A1B0GUA7 166 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 SLC12A8A0AV02 714 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 TARSL2A2RTX5 802 aaKnown RBP6.56□□□□□ -1.36
CUX1-220ENST00000607092 HHLA1C9JL84 531 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 ATXN7O15265 892 aaPredicted RBP6.56□□□□□ -1.36
CUX1-220ENST00000607092 TSPAN3O60637 253 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 RFPL3O75679 317 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 BEST1O76090 585 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 FSBPO95073 299 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms