RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 FAM72DQ6L9T8 149 aa18.6■□□□□ 0.57
VRK3-225ENST00000601912 NPNTQ6UXI9 565 aa18.6■□□□□ 0.57
VRK3-225ENST00000601912 PDZD4Q76G19 769 aaPredicted RBP18.6■□□□□ 0.57
VRK3-225ENST00000601912 FAM72BQ86X60 149 aa18.6■□□□□ 0.57
VRK3-225ENST00000601912 EIF1ADQ8N9N8 165 aaKnown RBP18.6■□□□□ 0.57
VRK3-225ENST00000601912 CCHCR1Q8TD31 782 aa18.6■□□□□ 0.57
VRK3-225ENST00000601912 C1orf74Q96LT6 269 aa18.6■□□□□ 0.57
VRK3-225ENST00000601912 DPP7Q9UHL4 492 aa18.6■□□□□ 0.57
VRK3-225ENST00000601912 LAMA2P24043 3122 aaKnown RBP18.6■□□□□ 0.57
VRK3-225ENST00000601912 GBF1Q92538 1859 aa18.6■□□□□ 0.57
VRK3-225ENST00000601912 LRIG2O94898 1065 aa18.6■□□□□ 0.57
VRK3-225ENST00000601912 RBP3P10745 1247 aa18.6■□□□□ 0.57
VRK3-225ENST00000601912 EPHB2P29323 1055 aa18.6■□□□□ 0.57
VRK3-225ENST00000601912 DRG2P55039 364 aaKnown RBP18.6■□□□□ 0.57
VRK3-225ENST00000601912 COG7P83436 770 aa18.6■□□□□ 0.57
VRK3-225ENST00000601912 PTK6Q13882 451 aa18.6■□□□□ 0.57
VRK3-225ENST00000601912 PPP2R2DQ66LE6 453 aa18.6■□□□□ 0.57
VRK3-225ENST00000601912 NUGGCQ68CJ6 796 aa18.6■□□□□ 0.57
VRK3-225ENST00000601912 DUPD1Q68J44 220 aa18.6■□□□□ 0.57
VRK3-225ENST00000601912 NCBP2-AS2Q69YL0 99 aa18.6■□□□□ 0.57
VRK3-225ENST00000601912 UNC45BQ8IWX7 931 aa18.6■□□□□ 0.57
VRK3-225ENST00000601912 ALLCQ8N6M5 410 aa18.6■□□□□ 0.57
VRK3-225ENST00000601912 CCDC89Q8N998 374 aa18.6■□□□□ 0.57
VRK3-225ENST00000601912 HNRNPLLQ8WVV9 542 aaKnown RBP18.6■□□□□ 0.57
VRK3-225ENST00000601912 CASKIN2Q8WXE0 1202 aa18.6■□□□□ 0.57
VRK3-225ENST00000601912 SEC14L1Q92503 715 aa18.6■□□□□ 0.57
VRK3-225ENST00000601912 BTN2A3PQ96KV6 586 aa18.6■□□□□ 0.57
VRK3-225ENST00000601912 TRIM31Q9BZY9 425 aa18.6■□□□□ 0.57
VRK3-225ENST00000601912 ARFGAP3Q9NP61 516 aa18.6■□□□□ 0.57
VRK3-225ENST00000601912 BHMG1C9JSJ3 638 aaPredicted RBP18.59■□□□□ 0.57
VRK3-225ENST00000601912 H7C0C1 242 aa18.59■□□□□ 0.57
VRK3-225ENST00000601912 SGK1O00141 431 aa18.59■□□□□ 0.57
VRK3-225ENST00000601912 COCHO43405 550 aa18.59■□□□□ 0.57
VRK3-225ENST00000601912 IGLV3-27P01718 113 aa18.59■□□□□ 0.57
VRK3-225ENST00000601912 F11P03951 625 aa18.59■□□□□ 0.57
VRK3-225ENST00000601912 HMBSP08397 361 aa18.59■□□□□ 0.57
VRK3-225ENST00000601912 SRGAP2BP0DMP2 458 aa18.59■□□□□ 0.57
VRK3-225ENST00000601912 ATP5OP48047 213 aa18.59■□□□□ 0.57
VRK3-225ENST00000601912 CLCN6P51797 869 aa18.59■□□□□ 0.57
VRK3-225ENST00000601912 DARS2Q6PI48 645 aaKnown RBP18.59■□□□□ 0.57
VRK3-225ENST00000601912 ELMSAN1Q6PJG2 1045 aa18.59■□□□□ 0.57
VRK3-225ENST00000601912 TMCO3Q6UWJ1 677 aa18.59■□□□□ 0.57
VRK3-225ENST00000601912 ZC3H18Q86VM9 953 aaKnown RBP18.59■□□□□ 0.57
VRK3-225ENST00000601912 RSAD2Q8WXG1 361 aa18.59■□□□□ 0.57
VRK3-225ENST00000601912 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.59■□□□□ 0.57
VRK3-225ENST00000601912 TMEM121Q9BTD3 319 aa18.59■□□□□ 0.57
VRK3-225ENST00000601912 DPH5Q9H2P9 285 aa18.59■□□□□ 0.57
VRK3-225ENST00000601912 NKX2-4Q9H2Z4 354 aa18.59■□□□□ 0.57
VRK3-225ENST00000601912 SLC28A3Q9HAS3 691 aa18.59■□□□□ 0.57
VRK3-225ENST00000601912 ZNF334Q9HCZ1 680 aaPredicted RBP18.59■□□□□ 0.57
VRK3-225ENST00000601912 ASIC3Q9UHC3 531 aa18.59■□□□□ 0.57
VRK3-225ENST00000601912 SNX10Q9Y5X0 201 aa18.59■□□□□ 0.57
VRK3-225ENST00000601912 H0YGN5 161 aa18.58■□□□□ 0.57
VRK3-225ENST00000601912 CLASP2O75122 1294 aaKnown RBP18.58■□□□□ 0.57
VRK3-225ENST00000601912 ERCC2P18074 760 aa18.58■□□□□ 0.57
VRK3-225ENST00000601912 STIP1P31948 543 aaKnown RBP18.58■□□□□ 0.57
VRK3-225ENST00000601912 CARSP49589 748 aaKnown RBP18.58■□□□□ 0.57
VRK3-225ENST00000601912 MLLT6P55198 1093 aaPredicted RBP18.58■□□□□ 0.57
VRK3-225ENST00000601912 NRG1Q02297 640 aaPredicted RBP18.58■□□□□ 0.57
VRK3-225ENST00000601912 XRCC4Q13426 336 aa18.58■□□□□ 0.57
VRK3-225ENST00000601912 HLTFQ14527 1009 aaKnown RBP eCLIP18.58■□□□□ 0.57
VRK3-225ENST00000601912 RWDD4Q6NW29 188 aaKnown RBP18.58■□□□□ 0.57
VRK3-225ENST00000601912 GCNAQ96QF7 691 aa18.58■□□□□ 0.57
VRK3-225ENST00000601912 LMAN2LQ9H0V9 348 aa18.58■□□□□ 0.57
VRK3-225ENST00000601912 CERS4Q9HA82 394 aa18.58■□□□□ 0.57
VRK3-225ENST00000601912 MAN1C1Q9NR34 630 aa18.58■□□□□ 0.57
VRK3-225ENST00000601912 ETNK2Q9NVF9 386 aa18.58■□□□□ 0.57
VRK3-225ENST00000601912 HS3ST4Q9Y661 456 aa18.58■□□□□ 0.57
VRK3-225ENST00000601912 DCLK1O15075 740 aa18.57■□□□□ 0.56
VRK3-225ENST00000601912 OAS1P00973 400 aaKnown RBP18.57■□□□□ 0.56
VRK3-225ENST00000601912 KRT14P02533 472 aa18.57■□□□□ 0.56
VRK3-225ENST00000601912 GABRR2P28476 465 aa18.57■□□□□ 0.56
VRK3-225ENST00000601912 HARS2P49590 506 aaKnown RBP18.57■□□□□ 0.56
VRK3-225ENST00000601912 GBE1Q04446 702 aa18.57■□□□□ 0.56
VRK3-225ENST00000601912 PAFAH1B3Q15102 231 aaKnown RBP18.57■□□□□ 0.56
VRK3-225ENST00000601912 LRRC31Q6UY01 552 aa18.57■□□□□ 0.56
VRK3-225ENST00000601912 TMEM150AQ86TG1 271 aa18.57■□□□□ 0.56
VRK3-225ENST00000601912 ARNTL2Q8WYA1 636 aa18.57■□□□□ 0.56
VRK3-225ENST00000601912 MRPS31Q92665 395 aaKnown RBP18.57■□□□□ 0.56
VRK3-225ENST00000601912 TBC1D31Q96DN5 1066 aa18.57■□□□□ 0.56
VRK3-225ENST00000601912 CATSPERBQ9H7T0 1116 aa18.57■□□□□ 0.56
VRK3-225ENST00000601912 IL21Q9HBE4 155 aa18.57■□□□□ 0.56
VRK3-225ENST00000601912 ASAH2Q9NR71 780 aa18.57■□□□□ 0.56
VRK3-225ENST00000601912 XPO7Q9UIA9 1087 aaKnown RBP18.57■□□□□ 0.56
VRK3-225ENST00000601912 NFU1Q9UMS0 254 aa18.57■□□□□ 0.56
VRK3-225ENST00000601912 SNX24Q9Y343 169 aa18.57■□□□□ 0.56
VRK3-225ENST00000601912 RAD54BQ9Y620 910 aa18.57■□□□□ 0.56
VRK3-225ENST00000601912 CFAP69A5D8W1 941 aa18.57■□□□□ 0.56
VRK3-225ENST00000601912 CCL16O15467 120 aa18.57■□□□□ 0.56
VRK3-225ENST00000601912 FGF10O15520 208 aaPredicted RBP18.57■□□□□ 0.56
VRK3-225ENST00000601912 CDC25CP30307 473 aa18.57■□□□□ 0.56
VRK3-225ENST00000601912 HOXA9P31269 272 aa18.57■□□□□ 0.56
VRK3-225ENST00000601912 SERPINB6P35237 376 aa18.57■□□□□ 0.56
VRK3-225ENST00000601912 GGCXP38435 758 aa18.57■□□□□ 0.56
VRK3-225ENST00000601912 ADCY8P40145 1251 aa18.57■□□□□ 0.56
VRK3-225ENST00000601912 TRADDQ15628 312 aa18.57■□□□□ 0.56
VRK3-225ENST00000601912 DDX42Q86XP3 938 aaKnown RBP eCLIP18.57■□□□□ 0.56
VRK3-225ENST00000601912 CDKL3Q8IVW4 592 aaPredicted RBP18.57■□□□□ 0.56
VRK3-225ENST00000601912 PLD4Q96BZ4 506 aa18.57■□□□□ 0.56
VRK3-225ENST00000601912 TRPC7Q9HCX4 862 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms