RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 WDCPQ9H6R7 721 aa20.08■□□□□ 0.81
UPF1-212ENST00000601689 IFNKQ9P0W0 207 aa20.08■□□□□ 0.81
UPF1-212ENST00000601689 BZW2Q9Y6E2 419 aaKnown RBP20.08■□□□□ 0.81
UPF1-212ENST00000601689 KCNU1A8MYU2 1149 aa20.07■□□□□ 0.8
UPF1-212ENST00000601689 UNGP13051 313 aaPredicted RBP20.07■□□□□ 0.8
UPF1-212ENST00000601689 CHRNB2P17787 502 aa20.07■□□□□ 0.8
UPF1-212ENST00000601689 KLHL30Q0D2K2 578 aa20.07■□□□□ 0.8
UPF1-212ENST00000601689 CLEC16AQ2KHT3 1053 aa20.07■□□□□ 0.8
UPF1-212ENST00000601689 SLC25A52Q3SY17 297 aa20.07■□□□□ 0.8
UPF1-212ENST00000601689 BRMS1LQ5PSV4 323 aa20.07■□□□□ 0.8
UPF1-212ENST00000601689 RABGAP1LQ5R372 815 aa20.07■□□□□ 0.8
UPF1-212ENST00000601689 PHTF2Q8N3S3 785 aa20.07■□□□□ 0.8
UPF1-212ENST00000601689 ALLCQ8N6M5 410 aa20.07■□□□□ 0.8
UPF1-212ENST00000601689 SLC30A5Q8TAD4 765 aa20.07■□□□□ 0.8
UPF1-212ENST00000601689 EZH1Q92800 747 aaPredicted RBP20.07■□□□□ 0.8
UPF1-212ENST00000601689 PPP1R9BQ96SB3 815 aa20.07■□□□□ 0.8
UPF1-212ENST00000601689 AIPL1Q9NZN9 384 aa20.07■□□□□ 0.8
UPF1-212ENST00000601689 A0A1W2PQJ5 194 aa20.06■□□□□ 0.8
UPF1-212ENST00000601689 K7ESF4 209 aa20.06■□□□□ 0.8
UPF1-212ENST00000601689 MOCS3O95396 460 aa20.06■□□□□ 0.8
UPF1-212ENST00000601689 CISD3P0C7P0 127 aa20.06■□□□□ 0.8
UPF1-212ENST00000601689 NTSR1P30989 418 aa20.06■□□□□ 0.8
UPF1-212ENST00000601689 SDC4P31431 198 aa20.06■□□□□ 0.8
UPF1-212ENST00000601689 KIR2DL1P43626 348 aaPredicted RBP20.06■□□□□ 0.8
UPF1-212ENST00000601689 FNTBP49356 437 aa20.06■□□□□ 0.8
UPF1-212ENST00000601689 MRE11P49959 708 aa20.06■□□□□ 0.8
UPF1-212ENST00000601689 CDH18Q13634 790 aa20.06■□□□□ 0.8
UPF1-212ENST00000601689 CRY1Q16526 586 aa20.06■□□□□ 0.8
UPF1-212ENST00000601689 MS4A13Q5J8X5 152 aa20.06■□□□□ 0.8
UPF1-212ENST00000601689 TTC39BQ5VTQ0 682 aaPredicted RBP20.06■□□□□ 0.8
UPF1-212ENST00000601689 PKN3Q6P5Z2 889 aa20.06■□□□□ 0.8
UPF1-212ENST00000601689 RFWD3Q6PCD5 774 aa20.06■□□□□ 0.8
UPF1-212ENST00000601689 WDR5BQ86VZ2 330 aa20.06■□□□□ 0.8
UPF1-212ENST00000601689 PHF13Q86YI8 300 aaPredicted RBP20.06■□□□□ 0.8
UPF1-212ENST00000601689 MFN1Q8IWA4 741 aa20.06■□□□□ 0.8
UPF1-212ENST00000601689 AHI1Q8N157 1196 aa20.06■□□□□ 0.8
UPF1-212ENST00000601689 IL17RCQ8NAC3 791 aa20.06■□□□□ 0.8
UPF1-212ENST00000601689 BAP1Q92560 729 aa20.06■□□□□ 0.8
UPF1-212ENST00000601689 NELL1Q92832 810 aa20.06■□□□□ 0.8
UPF1-212ENST00000601689 NPY6RQ99463 290 aa20.06■□□□□ 0.8
UPF1-212ENST00000601689 CIPCQ9C0C6 399 aa20.06■□□□□ 0.8
UPF1-212ENST00000601689 METTL5Q9NRN9 209 aaKnown RBP20.06■□□□□ 0.8
UPF1-212ENST00000601689 STIM2Q9P246 746 aa20.06■□□□□ 0.8
UPF1-212ENST00000601689 H0Y626 953 aa20.05■□□□□ 0.8
UPF1-212ENST00000601689 GFRA2O00451 464 aa20.05■□□□□ 0.8
UPF1-212ENST00000601689 AXIN1O15169 862 aa20.05■□□□□ 0.8
UPF1-212ENST00000601689 GFRA3O60609 400 aa20.05■□□□□ 0.8
UPF1-212ENST00000601689 ATP5BP06576 529 aaKnown RBP20.05■□□□□ 0.8
UPF1-212ENST00000601689 KRT3P12035 628 aa20.05■□□□□ 0.8
UPF1-212ENST00000601689 HOXD9P28356 352 aaPredicted RBP20.05■□□□□ 0.8
UPF1-212ENST00000601689 OXCT1P55809 520 aa20.05■□□□□ 0.8
UPF1-212ENST00000601689 C1QBPQ07021 282 aaKnown RBP20.05■□□□□ 0.8
UPF1-212ENST00000601689 TSR1Q2NL82 804 aaKnown RBP20.05■□□□□ 0.8
UPF1-212ENST00000601689 ARL13BQ3SXY8 428 aa20.05■□□□□ 0.8
UPF1-212ENST00000601689 FAM133BQ5BKY9 247 aaKnown RBP20.05■□□□□ 0.8
UPF1-212ENST00000601689 RAP1GAP2Q684P5 730 aa20.05■□□□□ 0.8
UPF1-212ENST00000601689 ACAD10Q6JQN1 1059 aa20.05■□□□□ 0.8
UPF1-212ENST00000601689 CEP68Q76N32 757 aa20.05■□□□□ 0.8
UPF1-212ENST00000601689 IRF2BP2Q7Z5L9 587 aa20.05■□□□□ 0.8
UPF1-212ENST00000601689 ALYREFQ86V81 257 aaKnown RBP20.05■□□□□ 0.8
UPF1-212ENST00000601689 LGI2Q8N0V4 545 aa20.05■□□□□ 0.8
UPF1-212ENST00000601689 PGAP3Q96FM1 320 aaPredicted RBP20.05■□□□□ 0.8
UPF1-212ENST00000601689 HHIPQ96QV1 700 aa20.05■□□□□ 0.8
UPF1-212ENST00000601689 BCCIPQ9P287 314 aaKnown RBP eCLIP20.05■□□□□ 0.8
UPF1-212ENST00000601689 PLA2G4CQ9UP65 541 aa20.05■□□□□ 0.8
UPF1-212ENST00000601689 LUC7L2Q9Y383 392 aaKnown RBP20.05■□□□□ 0.8
UPF1-212ENST00000601689 GOLGA6L7A0A1B0GV03 622 aa20.04■□□□□ 0.8
UPF1-212ENST00000601689 FAM170AA1A519 330 aa20.04■□□□□ 0.8
UPF1-212ENST00000601689 TRIM24O15164 1050 aa20.04■□□□□ 0.8
UPF1-212ENST00000601689 LILRB5O75023 590 aa20.04■□□□□ 0.8
UPF1-212ENST00000601689 TDGF1P13385 188 aa20.04■□□□□ 0.8
UPF1-212ENST00000601689 HOXB2P14652 356 aa20.04■□□□□ 0.8
UPF1-212ENST00000601689 TACR2P21452 398 aa20.04■□□□□ 0.8
UPF1-212ENST00000601689 RDXP35241 583 aaKnown RBP20.04■□□□□ 0.8
UPF1-212ENST00000601689 BYSLQ13895 437 aaKnown RBP20.04■□□□□ 0.8
UPF1-212ENST00000601689 TRIM14Q14142 442 aa20.04■□□□□ 0.8
UPF1-212ENST00000601689 STARD3Q14849 445 aa20.04■□□□□ 0.8
UPF1-212ENST00000601689 C2CD6Q53TS8 623 aa20.04■□□□□ 0.8
UPF1-212ENST00000601689 TDRD12Q587J7 1177 aaKnown RBP20.04■□□□□ 0.8
UPF1-212ENST00000601689 EMC10Q5UCC4 262 aa20.04■□□□□ 0.8
UPF1-212ENST00000601689 LRRC31Q6UY01 552 aa20.04■□□□□ 0.8
UPF1-212ENST00000601689 C11orf74Q86VG3 221 aa20.04■□□□□ 0.8
UPF1-212ENST00000601689 PGBD3Q8N328 593 aa20.04■□□□□ 0.8
UPF1-212ENST00000601689 CARNMT1Q8N4J0 409 aa20.04■□□□□ 0.8
UPF1-212ENST00000601689 CPLX3Q8WVH0 158 aa20.04■□□□□ 0.8
UPF1-212ENST00000601689 VCPIP1Q96JH7 1222 aa20.04■□□□□ 0.8
UPF1-212ENST00000601689 HINFPQ9BQA5 517 aa20.04■□□□□ 0.8
UPF1-212ENST00000601689 HAUS4Q9H6D7 363 aa20.04■□□□□ 0.8
UPF1-212ENST00000601689 ELOVL2Q9NXB9 296 aa20.04■□□□□ 0.8
UPF1-212ENST00000601689 EBF1Q9UH73 591 aa20.04■□□□□ 0.8
UPF1-212ENST00000601689 ITIH6Q6UXX5 1313 aa20.03■□□□□ 0.8
UPF1-212ENST00000601689 PRRT4C9JH25 899 aa20.03■□□□□ 0.8
UPF1-212ENST00000601689 PABPC1P11940 636 aaKnown RBP20.03■□□□□ 0.8
UPF1-212ENST00000601689 HNRNPLP14866 589 aaKnown RBP eCLIP20.03■□□□□ 0.8
UPF1-212ENST00000601689 PDGFRAP16234 1089 aa20.03■□□□□ 0.8
UPF1-212ENST00000601689 POLR2EP19388 210 aaKnown RBP20.03■□□□□ 0.8
UPF1-212ENST00000601689 SLC6A4P31645 630 aa20.03■□□□□ 0.8
UPF1-212ENST00000601689 PRKCIP41743 596 aa20.03■□□□□ 0.8
UPF1-212ENST00000601689 GSCP56915 257 aaPredicted RBP20.03■□□□□ 0.8
UPF1-212ENST00000601689 ZBED6P86452 979 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms