RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 CCDC114Q96M63 670 aa12.11□□□□□ -0.47
VRK3-223ENST00000601341 TGS1Q96RS0 853 aaKnown RBP12.11□□□□□ -0.47
VRK3-223ENST00000601341 TBCBQ99426 244 aa12.11□□□□□ -0.47
VRK3-223ENST00000601341 NPY6RQ99463 290 aa12.11□□□□□ -0.47
VRK3-223ENST00000601341 ZWILCHQ9H900 591 aa12.11□□□□□ -0.47
VRK3-223ENST00000601341 TLR9Q9NR96 1032 aa12.11□□□□□ -0.47
VRK3-223ENST00000601341 SAMD15Q9P1V8 674 aa12.11□□□□□ -0.47
VRK3-223ENST00000601341 PTPRDP23468 1912 aa12.11□□□□□ -0.47
VRK3-223ENST00000601341 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.1□□□□□ -0.47
VRK3-223ENST00000601341 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.1□□□□□ -0.47
VRK3-223ENST00000601341 ANKRD65E5RJM6 399 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 M0QYT0 321 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 PRRG1O14668 218 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 LIASO43766 372 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 ENDOD1O94919 500 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 ITGAVP06756 1048 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 ATF6P18850 670 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 TFE3P19532 575 aaPredicted RBP12.1□□□□□ -0.47
VRK3-223ENST00000601341 ERVFC1P60507 584 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 QPCTQ16769 361 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 ATP13A4Q4VNC1 1196 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 TFDP3Q5H9I0 405 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 SCYL2Q6P3W7 929 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 MRPL43Q8N983 215 aaKnown RBP12.1□□□□□ -0.47
VRK3-223ENST00000601341 TTC13Q8NBP0 860 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 MDM1Q8TC05 714 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 GIPC2Q8TF65 315 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 CCT6BQ92526 530 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 EDEM1Q92611 657 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 ARHGEF2Q92974 986 aaKnown RBP12.1□□□□□ -0.47
VRK3-223ENST00000601341 FBXO32Q969P5 355 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 SLITRK1Q96PX8 696 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 SELENOSQ9BQE4 189 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 LRRC4CQ9HCJ2 640 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 SENP1Q9P0U3 644 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 FETUBQ9UGM5 382 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 R3HDM2Q9Y2K5 976 aaKnown RBP12.1□□□□□ -0.47
VRK3-223ENST00000601341 CAPN7Q9Y6W3 813 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 LAMA2P24043 3122 aaKnown RBP12.1□□□□□ -0.47
VRK3-223ENST00000601341 CEP290O15078 2479 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 SLC38A8A6NNN8 435 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 H0YHG0 523 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 LPXNO60711 386 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 F9P00740 461 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 KRT1P04264 644 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 RDXP35241 583 aaKnown RBP12.1□□□□□ -0.47
VRK3-223ENST00000601341 PSEN1P49768 467 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 ERVK-21P61565 698 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 USP46P62068 366 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 SNX1Q13596 522 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 MORF4L2Q15014 288 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 SMTNL2Q2TAL5 461 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 ANKRD20A8PQ5CZ79 823 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 KCNT1Q5JUK3 1230 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 RNF187Q5TA31 235 aaPredicted RBP12.1□□□□□ -0.47
VRK3-223ENST00000601341 TXNRD3NBQ6F5E7 133 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 BNIPLQ7Z465 357 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 PCGF5Q86SE9 256 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 SCD5Q86SK9 330 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 CCDC25Q86WR0 208 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 CCDC13Q8IYE1 715 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 GBP7Q8N8V2 638 aaPredicted RBP12.1□□□□□ -0.47
VRK3-223ENST00000601341 STKLD1Q8NE28 680 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 SLC7A14Q8TBB6 771 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 MICAL1Q8TDZ2 1067 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 TEKT4Q8WW24 435 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 ATG4AQ8WYN0 398 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 PGAP3Q96FM1 320 aaPredicted RBP12.1□□□□□ -0.47
VRK3-223ENST00000601341 KLHL5Q96PQ7 755 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 HERPUD2Q9BSE4 406 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 TTLL2Q9BWV7 592 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 EURLQ9NYK6 297 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 SHOC2Q9UQ13 582 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 YIPF1Q9Y548 306 aa12.1□□□□□ -0.47
VRK3-223ENST00000601341 A0A1W2PQH9 124 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 LRRD1A4D1F6 860 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 CCT8L1PA6NM43 557 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 DNALI1O14645 258 aaPredicted RBP12.09□□□□□ -0.47
VRK3-223ENST00000601341 TGM5O43548 720 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 DNAJC8O75937 253 aaPredicted RBP12.09□□□□□ -0.47
VRK3-223ENST00000601341 ARHGEF15O94989 841 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 CSH1P0DML2 217 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 CSH2P0DML3 217 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 DNAJB1P25685 340 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 DEUP1Q05D60 604 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 TAF10Q12962 218 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 NME3Q13232 169 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 VEPH1Q14D04 833 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 TAF12Q16514 161 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 RAB6CQ53S08 254 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 IZUMO3Q5VZ72 239 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 PPP1R21Q6ZMI0 780 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 ARHGEF18Q6ZSZ5 1173 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 ALLCQ8N6M5 410 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 KCTD6Q8NC69 237 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 CMASQ8NFW8 434 aaPredicted RBP12.09□□□□□ -0.47
VRK3-223ENST00000601341 RNF139Q8WU17 664 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 HSPH1Q92598 858 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 SGSM3Q96HU1 749 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 PEBP4Q96S96 227 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms