RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 DEFB106AQ8N104 65 aa16.82■□□□□ 0.28
LSM4-206ENST00000600289 NAT16Q8N8M0 369 aa16.82■□□□□ 0.28
LSM4-206ENST00000600289 RPLP0P6Q8NHW5 317 aa16.82■□□□□ 0.28
LSM4-206ENST00000600289 SLC2A11Q9BYW1 496 aa16.82■□□□□ 0.28
LSM4-206ENST00000600289 DNAJC17Q9NVM6 304 aaKnown RBP16.82■□□□□ 0.28
LSM4-206ENST00000600289 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.82■□□□□ 0.28
LSM4-206ENST00000600289 ACSL4O60488 711 aa16.81■□□□□ 0.28
LSM4-206ENST00000600289 CISD3P0C7P0 127 aa16.81■□□□□ 0.28
LSM4-206ENST00000600289 MMP8P22894 467 aa16.81■□□□□ 0.28
LSM4-206ENST00000600289 NOS2P35228 1153 aa16.81■□□□□ 0.28
LSM4-206ENST00000600289 PBX1P40424 430 aa16.81■□□□□ 0.28
LSM4-206ENST00000600289 KIR2DL1P43626 348 aaPredicted RBP16.81■□□□□ 0.28
LSM4-206ENST00000600289 DGKGP49619 791 aa16.81■□□□□ 0.28
LSM4-206ENST00000600289 GSCP56915 257 aaPredicted RBP16.81■□□□□ 0.28
LSM4-206ENST00000600289 CDK17Q00537 523 aa16.81■□□□□ 0.28
LSM4-206ENST00000600289 CENPCQ03188 943 aa16.81■□□□□ 0.28
LSM4-206ENST00000600289 MTA1Q13330 715 aa16.81■□□□□ 0.28
LSM4-206ENST00000600289 DCAF6Q58WW2 860 aa16.81■□□□□ 0.28
LSM4-206ENST00000600289 FAM133BQ5BKY9 247 aaKnown RBP16.81■□□□□ 0.28
LSM4-206ENST00000600289 MPP7Q5T2T1 576 aa16.81■□□□□ 0.28
LSM4-206ENST00000600289 NAA35Q5VZE5 725 aa16.81■□□□□ 0.28
LSM4-206ENST00000600289 LRSAM1Q6UWE0 723 aa16.81■□□□□ 0.28
LSM4-206ENST00000600289 CAMKK1Q8N5S9 505 aa16.81■□□□□ 0.28
LSM4-206ENST00000600289 NETO1Q8TDF5 533 aa16.81■□□□□ 0.28
LSM4-206ENST00000600289 NT5C3BQ969T7 300 aa16.81■□□□□ 0.28
LSM4-206ENST00000600289 DDX50Q9BQ39 737 aaKnown RBP16.81■□□□□ 0.28
LSM4-206ENST00000600289 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.81■□□□□ 0.28
LSM4-206ENST00000600289 C2orf42Q9NWW7 574 aa16.81■□□□□ 0.28
LSM4-206ENST00000600289 MMP17Q9ULZ9 603 aa16.81■□□□□ 0.28
LSM4-206ENST00000600289 APOEP02649 317 aa16.8■□□□□ 0.28
LSM4-206ENST00000600289 SLC2A3P11169 496 aa16.8■□□□□ 0.28
LSM4-206ENST00000600289 GBP1P32455 592 aa16.8■□□□□ 0.28
LSM4-206ENST00000600289 MATKP42679 507 aa16.8■□□□□ 0.28
LSM4-206ENST00000600289 SHC2P98077 582 aa16.8■□□□□ 0.28
LSM4-206ENST00000600289 TSSK4Q6SA08 328 aa16.8■□□□□ 0.28
LSM4-206ENST00000600289 IRF2BP2Q7Z5L9 587 aa16.8■□□□□ 0.28
LSM4-206ENST00000600289 ADAM32Q8TC27 787 aa16.8■□□□□ 0.28
LSM4-206ENST00000600289 IQCDQ96DY2 449 aa16.8■□□□□ 0.28
LSM4-206ENST00000600289 PGAP3Q96FM1 320 aaPredicted RBP16.8■□□□□ 0.28
LSM4-206ENST00000600289 SYT11Q9BT88 431 aa16.8■□□□□ 0.28
LSM4-206ENST00000600289 NUP58Q9BVL2 599 aa16.8■□□□□ 0.28
LSM4-206ENST00000600289 MYO18AQ92614 2054 aaKnown RBP16.8■□□□□ 0.28
LSM4-206ENST00000600289 NYNRINQ9P2P1 1898 aaKnown RBP16.8■□□□□ 0.28
LSM4-206ENST00000600289 CKAP5Q14008 2032 aa16.79■□□□□ 0.28
LSM4-206ENST00000600289 HOXD9P28356 352 aaPredicted RBP16.79■□□□□ 0.28
LSM4-206ENST00000600289 UBASH3AP57075 661 aa16.79■□□□□ 0.28
LSM4-206ENST00000600289 PITX1P78337 314 aaPredicted RBP16.79■□□□□ 0.28
LSM4-206ENST00000600289 CLEC16AQ2KHT3 1053 aa16.79■□□□□ 0.28
LSM4-206ENST00000600289 C10orf76Q5T2E6 689 aa16.79■□□□□ 0.28
LSM4-206ENST00000600289 FAM102AQ5T9C2 384 aaPredicted RBP16.79■□□□□ 0.28
LSM4-206ENST00000600289 PIK3R6Q5UE93 754 aa16.79■□□□□ 0.28
LSM4-206ENST00000600289 OTUD1Q5VV17 481 aaPredicted RBP16.79■□□□□ 0.28
LSM4-206ENST00000600289 NADSYN1Q6IA69 706 aa16.79■□□□□ 0.28
LSM4-206ENST00000600289 TRMT11Q7Z4G4 463 aaKnown RBP16.79■□□□□ 0.28
LSM4-206ENST00000600289 LONP2Q86WA8 852 aa16.79■□□□□ 0.28
LSM4-206ENST00000600289 PHF13Q86YI8 300 aaPredicted RBP16.79■□□□□ 0.28
LSM4-206ENST00000600289 SFTPA1Q8IWL2 248 aa16.79■□□□□ 0.28
LSM4-206ENST00000600289 ZNF557Q8N988 423 aaPredicted RBP16.79■□□□□ 0.28
LSM4-206ENST00000600289 IL17RCQ8NAC3 791 aa16.79■□□□□ 0.28
LSM4-206ENST00000600289 DDI1Q8WTU0 396 aa16.79■□□□□ 0.28
LSM4-206ENST00000600289 ATRIPQ8WXE1 791 aa16.79■□□□□ 0.28
LSM4-206ENST00000600289 CPA5Q8WXQ8 436 aa16.79■□□□□ 0.28
LSM4-206ENST00000600289 BTN2A3PQ96KV6 586 aa16.79■□□□□ 0.28
LSM4-206ENST00000600289 PCDHB18PQ96TA0 734 aa16.79■□□□□ 0.28
LSM4-206ENST00000600289 NPY6RQ99463 290 aa16.79■□□□□ 0.28
LSM4-206ENST00000600289 AGPAT1Q99943 283 aa16.79■□□□□ 0.28
LSM4-206ENST00000600289 TSPY26PQ9H489 355 aa16.79■□□□□ 0.28
LSM4-206ENST00000600289 FAM204AQ9H8W3 233 aa16.79■□□□□ 0.28
LSM4-206ENST00000600289 PLK2Q9NYY3 685 aa16.79■□□□□ 0.28
LSM4-206ENST00000600289 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.79■□□□□ 0.28
LSM4-206ENST00000600289 AIPL1Q9NZN9 384 aa16.79■□□□□ 0.28
LSM4-206ENST00000600289 TMEM59LQ9UK28 342 aa16.79■□□□□ 0.28
LSM4-206ENST00000600289 STAP1Q9ULZ2 295 aa16.79■□□□□ 0.28
LSM4-206ENST00000600289 SLC8A2Q9UPR5 921 aa16.79■□□□□ 0.28
LSM4-206ENST00000600289 A0A1W2PQJ5 194 aa16.78■□□□□ 0.28
LSM4-206ENST00000600289 TBC1D3BA6NDS4 549 aa16.78■□□□□ 0.28
LSM4-206ENST00000600289 LRRC53A6NM62 1247 aa16.78■□□□□ 0.28
LSM4-206ENST00000600289 KCNU1A8MYU2 1149 aa16.78■□□□□ 0.28
LSM4-206ENST00000600289 TRIM24O15164 1050 aa16.78■□□□□ 0.28
LSM4-206ENST00000600289 GRAP2O75791 330 aa16.78■□□□□ 0.28
LSM4-206ENST00000600289 PROS1P07225 676 aa16.78■□□□□ 0.28
LSM4-206ENST00000600289 SLC6A4P31645 630 aa16.78■□□□□ 0.28
LSM4-206ENST00000600289 CCR1P32246 355 aa16.78■□□□□ 0.28
LSM4-206ENST00000600289 CNR2P34972 360 aa16.78■□□□□ 0.28
LSM4-206ENST00000600289 PRKCIP41743 596 aa16.78■□□□□ 0.28
LSM4-206ENST00000600289 SEC13P55735 322 aa16.78■□□□□ 0.28
LSM4-206ENST00000600289 SPEM2Q0P670 501 aa16.78■□□□□ 0.28
LSM4-206ENST00000600289 PTP4A2Q12974 167 aa16.78■□□□□ 0.28
LSM4-206ENST00000600289 DMC1Q14565 340 aa16.78■□□□□ 0.28
LSM4-206ENST00000600289 EIF4HQ15056 248 aaKnown RBP16.78■□□□□ 0.28
LSM4-206ENST00000600289 C2orf27AQ580R0 203 aa16.78■□□□□ 0.28
LSM4-206ENST00000600289 PPP1R2P3Q6NXS1 205 aa16.78■□□□□ 0.28
LSM4-206ENST00000600289 BNIPLQ7Z465 357 aa16.78■□□□□ 0.28
LSM4-206ENST00000600289 WDR5BQ86VZ2 330 aa16.78■□□□□ 0.28
LSM4-206ENST00000600289 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.78■□□□□ 0.28
LSM4-206ENST00000600289 ATP6V0D2Q8N8Y2 350 aa16.78■□□□□ 0.28
LSM4-206ENST00000600289 HJURPQ8NCD3 748 aaPredicted RBP16.78■□□□□ 0.28
LSM4-206ENST00000600289 OLIG1Q8TAK6 271 aa16.78■□□□□ 0.28
LSM4-206ENST00000600289 TMA16Q96EY4 203 aaKnown RBP16.78■□□□□ 0.28
LSM4-206ENST00000600289 DDIT4Q9NX09 232 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms