RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 PPP1R36Q96LQ0 422 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 CDC42BPAQ5VT25 1732 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 ARHGAP23Q9P227 1491 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 AIM2O14862 343 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 NFICP08651 508 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 CYP2F1P24903 491 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 NDST1P52848 882 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 GRIK3Q13003 919 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 IYDQ6PHW0 289 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 SENP8Q96LD8 212 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 CNPPD1Q9BV87 410 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 EFCAB1Q9HAE3 211 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 VANGL2Q9ULK5 521 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 APODP05090 189 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 USP17L7P0C7H9 530 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 GCNT1Q02742 428 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 ADIGQ0VDE8 80 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 CCDC142Q17RM4 750 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 GLT6D1Q7Z4J2 308 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 ABTB1Q969K4 478 aaPredicted RBP20.94■□□□□ 0.94
UPF1-207ENST00000599848 KLHL20Q9Y2M5 609 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 USP15Q9Y4E8 981 aaPredicted RBP20.94■□□□□ 0.94
UPF1-207ENST00000599848 ERI2A8K979 691 aaKnown RBP20.94■□□□□ 0.94
UPF1-207ENST00000599848 SPIDRQ14159 915 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 NR1I3Q14994 352 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 CHI3L2Q15782 390 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 INAVAQ3KP66 663 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 OR8D1Q8WZ84 308 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 PPP1R10Q96QC0 940 aaKnown RBP20.94■□□□□ 0.94
UPF1-207ENST00000599848 TRIM51Q9BSJ1 452 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 EPN3Q9H201 632 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 ATP13A3Q9H7F0 1226 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 TLE6Q9H808 572 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 ALG13Q9NP73 1137 aaKnown RBP20.94■□□□□ 0.94
UPF1-207ENST00000599848 MRPS33Q9Y291 106 aaKnown RBP20.94■□□□□ 0.94
UPF1-207ENST00000599848 ZNF711Q9Y462 761 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 USP32Q8NFA0 1604 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 CLUHO75153 1309 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 A0A0A6YYK5 440 aaPredicted RBP20.93■□□□□ 0.94
UPF1-207ENST00000599848 H7C0S8 307 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 SERPINI2O75830 405 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 GPR15P49685 360 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 DCLRE1AQ6PJP8 1040 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 FGD2Q7Z6J4 655 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 CNDP1Q96KN2 507 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 MIR1-1HGQ9H1L0 117 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 EPS8L2Q9H6S3 715 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 ANKRD6Q9Y2G4 727 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 FGBP02675 491 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 MRPS25P82663 173 aaKnown RBP20.93■□□□□ 0.94
UPF1-207ENST00000599848 SPOCD1Q6ZMY3 1216 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 SLC5A5Q92911 643 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 ANKDD1BA6NHY2 528 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 CRYBB1P53674 252 aaPredicted RBP20.93■□□□□ 0.94
UPF1-207ENST00000599848 PGS1Q32NB8 556 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 SEZ6Q53EL9 994 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 BHLHB9Q6PI77 547 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 DSELQ8IZU8 1212 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 OR56A4Q8NGH8 313 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 RIN3Q8TB24 985 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 CORO1BQ9BR76 489 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 BRD9Q9H8M2 597 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 WHRNQ9P202 907 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 E9PBE3 544 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 SGTAO43765 313 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 ZNF862O60290 1169 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 CYP7B1O75881 506 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 ANXA5P08758 320 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 TYMPP19971 482 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 PDPK2PQ6A1A2 396 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 GPR142Q7Z601 462 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 SLC44A2Q8IWA5 706 aaPredicted RBP20.93■□□□□ 0.94
UPF1-207ENST00000599848 C4orf33Q8N1A6 199 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 MED8Q96G25 268 aa20.93■□□□□ 0.94
UPF1-207ENST00000599848 SKIV2L2P42285 1042 aaKnown RBP20.92■□□□□ 0.94
UPF1-207ENST00000599848 PEX5P50542 639 aa20.92■□□□□ 0.94
UPF1-207ENST00000599848 PLPPR4Q7Z2D5 763 aa20.92■□□□□ 0.94
UPF1-207ENST00000599848 ISCUQ9H1K1 167 aa20.92■□□□□ 0.94
UPF1-207ENST00000599848 NPHS2Q9NP85 383 aa20.92■□□□□ 0.94
UPF1-207ENST00000599848 EIF4BP23588 611 aaKnown RBP20.92■□□□□ 0.94
UPF1-207ENST00000599848 FIGNQ5HY92 759 aa20.92■□□□□ 0.94
UPF1-207ENST00000599848 C15orf52Q6ZUT6 534 aaKnown RBP20.92■□□□□ 0.94
UPF1-207ENST00000599848 PALB2Q86YC2 1186 aa20.92■□□□□ 0.94
UPF1-207ENST00000599848 TRAPPC5Q8IUR0 188 aa20.92■□□□□ 0.94
UPF1-207ENST00000599848 FAM120BQ96EK7 910 aaKnown RBP20.92■□□□□ 0.94
UPF1-207ENST00000599848 RMND5BQ96G75 393 aaPredicted RBP20.92■□□□□ 0.94
UPF1-207ENST00000599848 TSC22D3Q99576 134 aa20.92■□□□□ 0.94
UPF1-207ENST00000599848 ZC3H13Q5T200 1668 aaKnown RBP20.92■□□□□ 0.94
UPF1-207ENST00000599848 A0A1W2PQ67 120 aa20.92■□□□□ 0.94
UPF1-207ENST00000599848 CPSF4O95639 269 aaKnown RBP20.92■□□□□ 0.94
UPF1-207ENST00000599848 PON1P27169 355 aa20.92■□□□□ 0.94
UPF1-207ENST00000599848 SHMT1P34896 483 aa20.92■□□□□ 0.94
UPF1-207ENST00000599848 C1DQ13901 141 aaKnown RBP20.92■□□□□ 0.94
UPF1-207ENST00000599848 PSMD5Q16401 504 aa20.92■□□□□ 0.94
UPF1-207ENST00000599848 PRMT9Q6P2P2 845 aa20.92■□□□□ 0.94
UPF1-207ENST00000599848 CYGBQ8WWM9 190 aa20.92■□□□□ 0.94
UPF1-207ENST00000599848 AKT1S1Q96B36 256 aa20.92■□□□□ 0.94
UPF1-207ENST00000599848 PIPSLA2A3N6 862 aa20.92■□□□□ 0.94
UPF1-207ENST00000599848 HNRNPH2P55795 449 aaKnown RBP20.92■□□□□ 0.94
UPF1-207ENST00000599848 BOP1Q14137 746 aaKnown RBP20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms