RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 TAC4Q86UU9 113 aa14.68□□□□□ -0.06
LIG1-218ENST00000599322 RASSF3Q86WH2 238 aa14.68□□□□□ -0.06
LIG1-218ENST00000599322 CHSY1Q86X52 802 aa14.68□□□□□ -0.06
LIG1-218ENST00000599322 SFTPA1Q8IWL2 248 aa14.68□□□□□ -0.06
LIG1-218ENST00000599322 DEFB106AQ8N104 65 aa14.68□□□□□ -0.06
LIG1-218ENST00000599322 AHI1Q8N157 1196 aa14.68□□□□□ -0.06
LIG1-218ENST00000599322 C12orf50Q8NA57 414 aaPredicted RBP14.68□□□□□ -0.06
LIG1-218ENST00000599322 ADAM32Q8TC27 787 aa14.68□□□□□ -0.06
LIG1-218ENST00000599322 ZC3H10Q96K80 434 aaKnown RBP14.68□□□□□ -0.06
LIG1-218ENST00000599322 PPP1R9BQ96SB3 815 aa14.68□□□□□ -0.06
LIG1-218ENST00000599322 BPIFA3Q9BQP9 254 aa14.68□□□□□ -0.06
LIG1-218ENST00000599322 NAA15Q9BXJ9 866 aaKnown RBP14.68□□□□□ -0.06
LIG1-218ENST00000599322 NLRC4Q9NPP4 1024 aa14.68□□□□□ -0.06
LIG1-218ENST00000599322 DDIT4Q9NX09 232 aa14.68□□□□□ -0.06
LIG1-218ENST00000599322 COX16Q9P0S2 106 aa14.68□□□□□ -0.06
LIG1-218ENST00000599322 STIM2Q9P246 746 aa14.68□□□□□ -0.06
LIG1-218ENST00000599322 CYTH4Q9UIA0 394 aa14.68□□□□□ -0.06
LIG1-218ENST00000599322 AJAP1Q9UKB5 411 aaPredicted RBP14.68□□□□□ -0.06
LIG1-218ENST00000599322 PCDHGA5Q9Y5G8 931 aa14.68□□□□□ -0.06
LIG1-218ENST00000599322 MYOFQ9NZM1 2061 aa14.68□□□□□ -0.06
LIG1-218ENST00000599322 LRRC10BA6NIK2 292 aa14.67□□□□□ -0.06
LIG1-218ENST00000599322 PRRT4C9JH25 899 aa14.67□□□□□ -0.06
LIG1-218ENST00000599322 F5H5T6 163 aa14.67□□□□□ -0.06
LIG1-218ENST00000599322 F9P00740 461 aa14.67□□□□□ -0.06
LIG1-218ENST00000599322 FYNP06241 537 aa14.67□□□□□ -0.06
LIG1-218ENST00000599322 POLR2EP19388 210 aaKnown RBP14.67□□□□□ -0.06
LIG1-218ENST00000599322 DPP6P42658 865 aa14.67□□□□□ -0.06
LIG1-218ENST00000599322 ZNF165P49910 485 aa14.67□□□□□ -0.06
LIG1-218ENST00000599322 RNASE9P60153 205 aaKnown RBP14.67□□□□□ -0.06
LIG1-218ENST00000599322 ST8SIA6P61647 398 aa14.67□□□□□ -0.06
LIG1-218ENST00000599322 SPEM2Q0P670 501 aa14.67□□□□□ -0.06
LIG1-218ENST00000599322 CDH18Q13634 790 aa14.67□□□□□ -0.06
LIG1-218ENST00000599322 SKOR2Q2VWA4 1001 aaPredicted RBP14.67□□□□□ -0.06
LIG1-218ENST00000599322 ZC3H12AQ5D1E8 599 aaKnown RBP14.67□□□□□ -0.06
LIG1-218ENST00000599322 RABGAP1LQ5R372 815 aa14.67□□□□□ -0.06
LIG1-218ENST00000599322 PIK3R6Q5UE93 754 aa14.67□□□□□ -0.06
LIG1-218ENST00000599322 SYPL2Q5VXT5 272 aa14.67□□□□□ -0.06
LIG1-218ENST00000599322 SLC36A4Q6YBV0 504 aa14.67□□□□□ -0.06
LIG1-218ENST00000599322 FAM183BPQ6ZVS7 135 aa14.67□□□□□ -0.06
LIG1-218ENST00000599322 LPCAT2Q7L5N7 544 aa14.67□□□□□ -0.06
LIG1-218ENST00000599322 SLC26A9Q7LBE3 791 aa14.67□□□□□ -0.06
LIG1-218ENST00000599322 KBTBD6Q86V97 674 aa14.67□□□□□ -0.06
LIG1-218ENST00000599322 MFN1Q8IWA4 741 aa14.67□□□□□ -0.06
LIG1-218ENST00000599322 CARNMT1Q8N4J0 409 aa14.67□□□□□ -0.06
LIG1-218ENST00000599322 WDTC1Q8N5D0 677 aa14.67□□□□□ -0.06
LIG1-218ENST00000599322 MDGA1Q8NFP4 955 aa14.67□□□□□ -0.06
LIG1-218ENST00000599322 FCRL2Q96LA5 508 aaPredicted RBP14.67□□□□□ -0.06
LIG1-218ENST00000599322 ZDHHC4Q9NPG8 344 aa14.67□□□□□ -0.06
LIG1-218ENST00000599322 CACNA2D2Q9NY47 1150 aa14.67□□□□□ -0.06
LIG1-218ENST00000599322 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.67□□□□□ -0.06
LIG1-218ENST00000599322 STON1Q9Y6Q2 735 aa14.67□□□□□ -0.06
LIG1-218ENST00000599322 NCOR2Q9Y618 2525 aa14.67□□□□□ -0.06
LIG1-218ENST00000599322 H0Y626 953 aa14.66□□□□□ -0.06
LIG1-218ENST00000599322 ADAM23O75077 832 aa14.66□□□□□ -0.06
LIG1-218ENST00000599322 DAB1O75553 588 aa14.66□□□□□ -0.06
LIG1-218ENST00000599322 GRAP2O75791 330 aa14.66□□□□□ -0.06
LIG1-218ENST00000599322 PABPC1P11940 636 aaKnown RBP14.66□□□□□ -0.06
LIG1-218ENST00000599322 HOXD9P28356 352 aaPredicted RBP14.66□□□□□ -0.06
LIG1-218ENST00000599322 SCNN1AP37088 669 aa14.66□□□□□ -0.06
LIG1-218ENST00000599322 ATXN1P54253 815 aaKnown RBP14.66□□□□□ -0.06
LIG1-218ENST00000599322 OXCT1P55809 520 aa14.66□□□□□ -0.06
LIG1-218ENST00000599322 CDR2Q01850 454 aa14.66□□□□□ -0.06
LIG1-218ENST00000599322 NME3Q13232 169 aa14.66□□□□□ -0.06
LIG1-218ENST00000599322 CSRP2Q16527 193 aa14.66□□□□□ -0.06
LIG1-218ENST00000599322 GEN1Q17RS7 908 aa14.66□□□□□ -0.06
LIG1-218ENST00000599322 KLHL40Q2TBA0 621 aa14.66□□□□□ -0.06
LIG1-218ENST00000599322 PLK5Q496M5 336 aa14.66□□□□□ -0.06
LIG1-218ENST00000599322 FNDC3BQ53EP0 1204 aaKnown RBP14.66□□□□□ -0.06
LIG1-218ENST00000599322 FAM102AQ5T9C2 384 aaPredicted RBP14.66□□□□□ -0.06
LIG1-218ENST00000599322 TTC39BQ5VTQ0 682 aaPredicted RBP14.66□□□□□ -0.06
LIG1-218ENST00000599322 RFWD3Q6PCD5 774 aa14.66□□□□□ -0.06
LIG1-218ENST00000599322 LRSAM1Q6UWE0 723 aa14.66□□□□□ -0.06
LIG1-218ENST00000599322 SERPINA13PQ6UXR4 307 aa14.66□□□□□ -0.06
LIG1-218ENST00000599322 CHST9Q7L1S5 443 aa14.66□□□□□ -0.06
LIG1-218ENST00000599322 ZNF397Q8NF99 534 aaPredicted RBP14.66□□□□□ -0.06
LIG1-218ENST00000599322 SLC39A13Q96H72 371 aa14.66□□□□□ -0.06
LIG1-218ENST00000599322 PIWIL1Q96J94 861 aaKnown RBP14.66□□□□□ -0.06
LIG1-218ENST00000599322 SLC2A13Q96QE2 648 aa14.66□□□□□ -0.06
LIG1-218ENST00000599322 GABRG3Q99928 467 aa14.66□□□□□ -0.06
LIG1-218ENST00000599322 GANQ9H2C0 597 aa14.66□□□□□ -0.06
LIG1-218ENST00000599322 ARRDC1-AS1Q9H2J1 176 aa14.66□□□□□ -0.06
LIG1-218ENST00000599322 SEMA4GQ9NTN9 838 aa14.66□□□□□ -0.06
LIG1-218ENST00000599322 ABCB8Q9NUT2 735 aa14.66□□□□□ -0.06
LIG1-218ENST00000599322 THAP10Q9P2Z0 257 aaPredicted RBP14.66□□□□□ -0.06
LIG1-218ENST00000599322 GGA2Q9UJY4 613 aa14.66□□□□□ -0.06
LIG1-218ENST00000599322 INVSQ9Y283 1065 aa14.66□□□□□ -0.06
LIG1-218ENST00000599322 SPTBN2O15020 2390 aa14.66□□□□□ -0.06
LIG1-218ENST00000599322 GOLGA6L7A0A1B0GV03 622 aa14.65□□□□□ -0.06
LIG1-218ENST00000599322 KCNU1A8MYU2 1149 aa14.65□□□□□ -0.06
LIG1-218ENST00000599322 GOLGA6L19H0YKK7 550 aa14.65□□□□□ -0.06
LIG1-218ENST00000599322 M0QYT0 321 aa14.65□□□□□ -0.06
LIG1-218ENST00000599322 EPN2O95208 641 aa14.65□□□□□ -0.06
LIG1-218ENST00000599322 CAVIN2O95810 425 aa14.65□□□□□ -0.06
LIG1-218ENST00000599322 SERPINC1P01008 464 aa14.65□□□□□ -0.06
LIG1-218ENST00000599322 ERBB2P04626 1255 aa14.65□□□□□ -0.06
LIG1-218ENST00000599322 ACADMP11310 421 aa14.65□□□□□ -0.06
LIG1-218ENST00000599322 DESP17661 470 aa14.65□□□□□ -0.06
LIG1-218ENST00000599322 HOXC13P31276 330 aa14.65□□□□□ -0.06
LIG1-218ENST00000599322 CDH5P33151 784 aaPredicted RBP14.65□□□□□ -0.06
LIG1-218ENST00000599322 NNMTP40261 264 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms