RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 MYO1AQ9UBC5 1043 aa18.88■□□□□ 0.61
LIG1-216ENST00000598938 PCDHGA2Q9Y5H1 932 aa18.88■□□□□ 0.61
LIG1-216ENST00000598938 KMT2BQ9UMN6 2715 aaPredicted RBP18.88■□□□□ 0.61
LIG1-216ENST00000598938 TMEM191CA6NGB0 347 aa18.87■□□□□ 0.61
LIG1-216ENST00000598938 KCNU1A8MYU2 1149 aa18.87■□□□□ 0.61
LIG1-216ENST00000598938 APOEP02649 317 aa18.87■□□□□ 0.61
LIG1-216ENST00000598938 SLC2A3P11169 496 aa18.87■□□□□ 0.61
LIG1-216ENST00000598938 CCR1P32246 355 aa18.87■□□□□ 0.61
LIG1-216ENST00000598938 CXCR3P49682 368 aa18.87■□□□□ 0.61
LIG1-216ENST00000598938 ZNF143P52747 638 aaPredicted RBP18.87■□□□□ 0.61
LIG1-216ENST00000598938 DEUP1Q05D60 604 aa18.87■□□□□ 0.61
LIG1-216ENST00000598938 GSE1Q14687 1217 aa18.87■□□□□ 0.61
LIG1-216ENST00000598938 PPP2R5DQ14738 602 aa18.87■□□□□ 0.61
LIG1-216ENST00000598938 DHCR24Q15392 516 aa18.87■□□□□ 0.61
LIG1-216ENST00000598938 MLF2Q15773 248 aaPredicted RBP18.87■□□□□ 0.61
LIG1-216ENST00000598938 C15orf59Q2T9L4 293 aaPredicted RBP18.87■□□□□ 0.61
LIG1-216ENST00000598938 RHBDF2Q6PJF5 856 aa18.87■□□□□ 0.61
LIG1-216ENST00000598938 STRADAQ7RTN6 431 aa18.87■□□□□ 0.61
LIG1-216ENST00000598938 MAML2Q8IZL2 1156 aaPredicted RBP18.87■□□□□ 0.61
LIG1-216ENST00000598938 CPXM2Q8N436 756 aa18.87■□□□□ 0.61
LIG1-216ENST00000598938 TTC8Q8TAM2 541 aa18.87■□□□□ 0.61
LIG1-216ENST00000598938 ARHGEF26Q96DR7 871 aa18.87■□□□□ 0.61
LIG1-216ENST00000598938 BAG1Q99933 345 aaPredicted RBP18.87■□□□□ 0.61
LIG1-216ENST00000598938 FOXQ1Q9C009 403 aa18.87■□□□□ 0.61
LIG1-216ENST00000598938 C8orf33Q9H7E9 229 aaPredicted RBP18.87■□□□□ 0.61
LIG1-216ENST00000598938 SPHK2Q9NRA0 654 aa18.87■□□□□ 0.61
LIG1-216ENST00000598938 PIAS3Q9Y6X2 628 aa18.87■□□□□ 0.61
LIG1-216ENST00000598938 SOWAHDA6NJG2 315 aa18.86■□□□□ 0.61
LIG1-216ENST00000598938 SHISA7A6NL88 538 aa18.86■□□□□ 0.61
LIG1-216ENST00000598938 GFRA2O00451 464 aa18.86■□□□□ 0.61
LIG1-216ENST00000598938 LAMTOR5O43504 91 aa18.86■□□□□ 0.61
LIG1-216ENST00000598938 ACSL4O60488 711 aa18.86■□□□□ 0.61
LIG1-216ENST00000598938 H2AFZP0C0S5 128 aa18.86■□□□□ 0.61
LIG1-216ENST00000598938 RDXP35241 583 aaKnown RBP18.86■□□□□ 0.61
LIG1-216ENST00000598938 CYLC1P35663 651 aaPredicted RBP18.86■□□□□ 0.61
LIG1-216ENST00000598938 CHKAP35790 457 aa18.86■□□□□ 0.61
LIG1-216ENST00000598938 SLC11A2P49281 568 aa18.86■□□□□ 0.61
LIG1-216ENST00000598938 ATP11AP98196 1134 aa18.86■□□□□ 0.61
LIG1-216ENST00000598938 OGDHQ02218 1023 aa18.86■□□□□ 0.61
LIG1-216ENST00000598938 NR1H3Q13133 447 aa18.86■□□□□ 0.61
LIG1-216ENST00000598938 GAB4Q2WGN9 574 aa18.86■□□□□ 0.61
LIG1-216ENST00000598938 BRMS1LQ5PSV4 323 aa18.86■□□□□ 0.61
LIG1-216ENST00000598938 LY6G5CQ5SRR4 150 aa18.86■□□□□ 0.61
LIG1-216ENST00000598938 C10orf76Q5T2E6 689 aa18.86■□□□□ 0.61
LIG1-216ENST00000598938 SH3PXD2AQ5TCZ1 1133 aa18.86■□□□□ 0.61
LIG1-216ENST00000598938 H2AFVQ71UI9 128 aa18.86■□□□□ 0.61
LIG1-216ENST00000598938 CHFRQ96EP1 664 aa18.86■□□□□ 0.61
LIG1-216ENST00000598938 MSANTD3Q96H12 275 aa18.86■□□□□ 0.61
LIG1-216ENST00000598938 BTN2A3PQ96KV6 586 aa18.86■□□□□ 0.61
LIG1-216ENST00000598938 CNPY3Q9BT09 278 aa18.86■□□□□ 0.61
LIG1-216ENST00000598938 TRIM7Q9C029 511 aa18.86■□□□□ 0.61
LIG1-216ENST00000598938 ARHGEF38Q9NXL2 777 aa18.86■□□□□ 0.61
LIG1-216ENST00000598938 PAXBP1Q9Y5B6 917 aa18.86■□□□□ 0.61
LIG1-216ENST00000598938 GPR179Q6PRD1 2367 aa18.86■□□□□ 0.61
LIG1-216ENST00000598938 EIF3CLB5ME19 914 aaKnown RBP18.85■□□□□ 0.61
LIG1-216ENST00000598938 HOXC11O43248 304 aaPredicted RBP18.85■□□□□ 0.61
LIG1-216ENST00000598938 CCP110O43303 1012 aa18.85■□□□□ 0.61
LIG1-216ENST00000598938 MOCS2O96007 188 aaPredicted RBP18.85■□□□□ 0.61
LIG1-216ENST00000598938 ADH1CP00326 375 aa18.85■□□□□ 0.61
LIG1-216ENST00000598938 TMEM253P0C7T8 217 aa18.85■□□□□ 0.61
LIG1-216ENST00000598938 GJA4P35212 333 aa18.85■□□□□ 0.61
LIG1-216ENST00000598938 SOX9P48436 509 aa18.85■□□□□ 0.61
LIG1-216ENST00000598938 ATXN1P54253 815 aaKnown RBP18.85■□□□□ 0.61
LIG1-216ENST00000598938 ZNF252P-AS1Q0IIN9 211 aa18.85■□□□□ 0.61
LIG1-216ENST00000598938 MTA1Q13330 715 aa18.85■□□□□ 0.61
LIG1-216ENST00000598938 RAB6CQ53S08 254 aa18.85■□□□□ 0.61
LIG1-216ENST00000598938 FAM133BQ5BKY9 247 aaKnown RBP18.85■□□□□ 0.61
LIG1-216ENST00000598938 ADGRF1Q5T601 910 aa18.85■□□□□ 0.61
LIG1-216ENST00000598938 NADSYN1Q6IA69 706 aa18.85■□□□□ 0.61
LIG1-216ENST00000598938 RAD9BQ6WBX8 426 aa18.85■□□□□ 0.61
LIG1-216ENST00000598938 SND1Q7KZF4 910 aaKnown RBP eCLIP18.85■□□□□ 0.61
LIG1-216ENST00000598938 RALGPS2Q86X27 583 aaPredicted RBP18.85■□□□□ 0.61
LIG1-216ENST00000598938 TMEM25Q86YD3 366 aa18.85■□□□□ 0.61
LIG1-216ENST00000598938 ATP6V0D2Q8N8Y2 350 aa18.85■□□□□ 0.61
LIG1-216ENST00000598938 FNIP1Q8TF40 1166 aa18.85■□□□□ 0.61
LIG1-216ENST00000598938 FAM172AQ8WUF8 416 aa18.85■□□□□ 0.61
LIG1-216ENST00000598938 CTNNBL1Q8WYA6 563 aaPredicted RBP18.85■□□□□ 0.61
LIG1-216ENST00000598938 RNF34Q969K3 372 aa18.85■□□□□ 0.61
LIG1-216ENST00000598938 EIF3CQ99613 913 aaKnown RBP18.85■□□□□ 0.61
LIG1-216ENST00000598938 RAB6CQ9H0N0 254 aa18.85■□□□□ 0.61
LIG1-216ENST00000598938 MARK1Q9P0L2 795 aa18.85■□□□□ 0.61
LIG1-216ENST00000598938 NCDNQ9UBB6 729 aa18.85■□□□□ 0.61
LIG1-216ENST00000598938 SLC12A6Q9UHW9 1150 aa18.85■□□□□ 0.61
LIG1-216ENST00000598938 XPO7Q9UIA9 1087 aaKnown RBP18.85■□□□□ 0.61
LIG1-216ENST00000598938 INTUQ9ULD6 942 aa18.85■□□□□ 0.61
LIG1-216ENST00000598938 EPN1Q9Y6I3 576 aaPredicted RBP18.85■□□□□ 0.61
LIG1-216ENST00000598938 TPRP12270 2363 aaKnown RBP18.85■□□□□ 0.61
LIG1-216ENST00000598938 SPECC1L-ADORA2AF8WAN1 911 aa18.84■□□□□ 0.61
LIG1-216ENST00000598938 NDUFA10O95299 355 aa18.84■□□□□ 0.61
LIG1-216ENST00000598938 ADH5P11766 374 aa18.84■□□□□ 0.61
LIG1-216ENST00000598938 CTHP32929 405 aa18.84■□□□□ 0.61
LIG1-216ENST00000598938 HDAC4P56524 1084 aa18.84■□□□□ 0.61
LIG1-216ENST00000598938 CDO1Q16878 200 aa18.84■□□□□ 0.61
LIG1-216ENST00000598938 RSPO4Q2I0M5 234 aaPredicted RBP18.84■□□□□ 0.61
LIG1-216ENST00000598938 TPRG1Q6ZUI0 275 aa18.84■□□□□ 0.61
LIG1-216ENST00000598938 DCLK2Q8N568 766 aa18.84■□□□□ 0.61
LIG1-216ENST00000598938 ZBTB44Q8NCP5 570 aa18.84■□□□□ 0.61
LIG1-216ENST00000598938 P2RY11Q96G91 374 aa18.84■□□□□ 0.61
LIG1-216ENST00000598938 NELL2Q99435 816 aa18.84■□□□□ 0.61
LIG1-216ENST00000598938 NUP85Q9BW27 656 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms