RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 HCFC1R1Q9NWW0 138 aa15.76■□□□□ 0.11
TRIM28-209ENST00000597423 SMARCAL1Q9NZC9 954 aa15.76■□□□□ 0.11
TRIM28-209ENST00000597423 RAD54BQ9Y620 910 aa15.76■□□□□ 0.11
TRIM28-209ENST00000597423 PLXNA3P51805 1871 aa15.76■□□□□ 0.11
TRIM28-209ENST00000597423 GBF1Q92538 1859 aa15.76■□□□□ 0.11
TRIM28-209ENST00000597423 APOC4-APOC2K7ER74 178 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 ACSL4O60488 711 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 PHF2O75151 1096 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 APOC2P02655 101 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 GOT1P17174 413 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 EPHB2P29323 1055 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 FNTAP49354 379 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 TERF1P54274 439 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 DYNLT1P63172 113 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 C2orf54Q08AI8 447 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 ADAM15Q13444 863 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 CYP1B1Q16678 543 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 ATAT1Q5SQI0 421 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 RARS2Q5T160 578 aaKnown RBP15.75■□□□□ 0.11
TRIM28-209ENST00000597423 SLC9A4Q6AI14 798 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 RWDD4Q6NW29 188 aaKnown RBP15.75■□□□□ 0.11
TRIM28-209ENST00000597423 ANKRD54Q6NXT1 300 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 KLHL7Q8IXQ5 586 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 PYROXD2Q8N2H3 581 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 LZTR1Q8N653 840 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 C12orf76Q8N812 135 aaPredicted RBP15.75■□□□□ 0.11
TRIM28-209ENST00000597423 PRELID2Q8N945 189 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 MYRIPQ8NFW9 859 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 ATL2Q8NHH9 583 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 PCDH19Q8TAB3 1148 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 HAUS1Q96CS2 278 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 CYP2S1Q96SQ9 504 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 FERMT1Q9BQL6 677 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 SLC46A2Q9BY10 475 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 GKN1Q9NS71 199 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 RBM12Q9NTZ6 932 aaKnown RBP15.75■□□□□ 0.11
TRIM28-209ENST00000597423 PPARGC1AQ9UBK2 798 aaKnown RBP15.75■□□□□ 0.11
TRIM28-209ENST00000597423 ARHGAP26Q9UNA1 814 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 SH3BP1Q9Y3L3 701 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 CPQQ9Y646 472 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 HS3ST4Q9Y661 456 aa15.75■□□□□ 0.11
TRIM28-209ENST00000597423 F5H5T6 163 aa15.74■□□□□ 0.11
TRIM28-209ENST00000597423 STC2O76061 302 aa15.74■□□□□ 0.11
TRIM28-209ENST00000597423 LRIG2O94898 1065 aa15.74■□□□□ 0.11
TRIM28-209ENST00000597423 TUBBP07437 444 aa15.74■□□□□ 0.11
TRIM28-209ENST00000597423 AMPD1P23109 780 aa15.74■□□□□ 0.11
TRIM28-209ENST00000597423 CORO1AP31146 461 aaKnown RBP15.74■□□□□ 0.11
TRIM28-209ENST00000597423 SERPINB6P35237 376 aa15.74■□□□□ 0.11
TRIM28-209ENST00000597423 KCNQ1P51787 676 aa15.74■□□□□ 0.11
TRIM28-209ENST00000597423 SEMA3BQ13214 749 aa15.74■□□□□ 0.11
TRIM28-209ENST00000597423 AUHQ13825 339 aaKnown RBP15.74■□□□□ 0.11
TRIM28-209ENST00000597423 DHX34Q14147 1143 aaKnown RBP15.74■□□□□ 0.11
TRIM28-209ENST00000597423 TEAD2Q15562 447 aa15.74■□□□□ 0.11
TRIM28-209ENST00000597423 MS4A13Q5J8X5 152 aa15.74■□□□□ 0.11
TRIM28-209ENST00000597423 PRSS36Q5K4E3 855 aa15.74■□□□□ 0.11
TRIM28-209ENST00000597423 RABGAP1LQ5R372 815 aa15.74■□□□□ 0.11
TRIM28-209ENST00000597423 ADGRF1Q5T601 910 aa15.74■□□□□ 0.11
TRIM28-209ENST00000597423 DRICH1Q6PGQ1 229 aaPredicted RBP15.74■□□□□ 0.11
TRIM28-209ENST00000597423 TMCO3Q6UWJ1 677 aa15.74■□□□□ 0.11
TRIM28-209ENST00000597423 GPR149Q86SP6 731 aa15.74■□□□□ 0.11
TRIM28-209ENST00000597423 CCDC105Q8IYK2 499 aa15.74■□□□□ 0.11
TRIM28-209ENST00000597423 CMTM8Q8IZV2 173 aa15.74■□□□□ 0.11
TRIM28-209ENST00000597423 PLD5Q8N7P1 536 aa15.74■□□□□ 0.11
TRIM28-209ENST00000597423 C12orf50Q8NA57 414 aaPredicted RBP15.74■□□□□ 0.11
TRIM28-209ENST00000597423 KRT12Q99456 494 aa15.74■□□□□ 0.11
TRIM28-209ENST00000597423 GAS2L1Q99501 681 aaPredicted RBP15.74■□□□□ 0.11
TRIM28-209ENST00000597423 ANLNQ9NQW6 1124 aa15.74■□□□□ 0.11
TRIM28-209ENST00000597423 ARHGEF4Q9NR80 690 aa15.74■□□□□ 0.11
TRIM28-209ENST00000597423 TMPRSS4Q9NRS4 437 aa15.74■□□□□ 0.11
TRIM28-209ENST00000597423 SMPD4Q9NXE4 827 aa15.74■□□□□ 0.11
TRIM28-209ENST00000597423 DRG1Q9Y295 367 aaKnown RBP15.74■□□□□ 0.11
TRIM28-209ENST00000597423 COL4A4P53420 1690 aaPredicted RBP15.73■□□□□ 0.11
TRIM28-209ENST00000597423 TCRBV7S2A1N4TA0A589 114 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 E9PAM4 449 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 MCF2LO15068 1137 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 NCAM2O15394 837 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 IRF1P10914 325 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 GJA1P17302 382 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 ERCC2P18074 760 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 MX2P20592 715 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 FSHRP23945 695 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 WEE1P30291 646 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 GTF2F1P35269 517 aaKnown RBP eCLIP15.73■□□□□ 0.112e-14■■■■□ 22.2
TRIM28-209ENST00000597423 COILP38432 576 aaPredicted RBP15.73■□□□□ 0.11
TRIM28-209ENST00000597423 CCR2P41597 374 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 XRCC4Q13426 336 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 BYSLQ13895 437 aaKnown RBP15.73■□□□□ 0.11
TRIM28-209ENST00000597423 DPYSQ14117 519 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 GRIN2CQ14957 1233 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 TEX35Q5T0J7 233 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 PRPF38BQ5VTL8 546 aaKnown RBP15.73■□□□□ 0.11
TRIM28-209ENST00000597423 C8orf74Q6P047 294 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 SYDE1Q6ZW31 735 aaPredicted RBP15.73■□□□□ 0.11
TRIM28-209ENST00000597423 ANKS1BQ7Z6G8 1248 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 CHSY1Q86X52 802 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 DENND1CQ8IV53 801 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 PQLC3Q8N755 202 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 KIAA1958Q8N8K9 716 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 C1orf54Q8WWF1 131 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 ZYG11BQ9C0D3 744 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms