RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 RNF43Q68DV7 783 aa15.7■□□□□ 0.1
TRIM28-205ENST00000595028 NADSYN1Q6IA69 706 aa15.7■□□□□ 0.1
TRIM28-205ENST00000595028 OLFML1Q6UWY5 402 aa15.7■□□□□ 0.1
TRIM28-205ENST00000595028 CACNA2D4Q7Z3S7 1137 aa15.7■□□□□ 0.1
TRIM28-205ENST00000595028 KBTBD6Q86V97 674 aa15.7■□□□□ 0.1
TRIM28-205ENST00000595028 CHPFQ8IZ52 775 aa15.7■□□□□ 0.1
TRIM28-205ENST00000595028 EPS8L1Q8TE68 723 aa15.7■□□□□ 0.1
TRIM28-205ENST00000595028 DDX1Q92499 740 aaKnown RBP15.7■□□□□ 0.1
TRIM28-205ENST00000595028 SLC2A13Q96QE2 648 aa15.7■□□□□ 0.1
TRIM28-205ENST00000595028 ACOX2Q99424 681 aa15.7■□□□□ 0.1
TRIM28-205ENST00000595028 GABRG3Q99928 467 aa15.7■□□□□ 0.1
TRIM28-205ENST00000595028 IRX2Q9BZI1 471 aaPredicted RBP15.7■□□□□ 0.1
TRIM28-205ENST00000595028 NAT10Q9H0A0 1025 aaKnown RBP15.7■□□□□ 0.1
TRIM28-205ENST00000595028 SYNCQ9H7C4 482 aa15.7■□□□□ 0.1
TRIM28-205ENST00000595028 FAM207AQ9NSI2 230 aaPredicted RBP15.7■□□□□ 0.1
TRIM28-205ENST00000595028 SEMA4GQ9NTN9 838 aa15.7■□□□□ 0.1
TRIM28-205ENST00000595028 ABCA7Q8IZY2 2146 aa15.7■□□□□ 0.1
TRIM28-205ENST00000595028 WDFY3Q8IZQ1 3526 aa15.69■□□□□ 0.1
TRIM28-205ENST00000595028 SETXQ7Z333 2677 aaKnown RBP15.69■□□□□ 0.1
TRIM28-205ENST00000595028 DAB1O75553 588 aa15.69■□□□□ 0.1
TRIM28-205ENST00000595028 TRUB2O95900 331 aaKnown RBP15.69■□□□□ 0.1
TRIM28-205ENST00000595028 SLC6A4P31645 630 aa15.69■□□□□ 0.1
TRIM28-205ENST00000595028 WASP42768 502 aa15.69■□□□□ 0.1
TRIM28-205ENST00000595028 SGSHP51688 502 aa15.69■□□□□ 0.1
TRIM28-205ENST00000595028 JAM2P57087 298 aa15.69■□□□□ 0.1
TRIM28-205ENST00000595028 SNX16P57768 344 aa15.69■□□□□ 0.1
TRIM28-205ENST00000595028 POLR2FP61218 127 aaKnown RBP15.69■□□□□ 0.1
TRIM28-205ENST00000595028 PITX1P78337 314 aaPredicted RBP15.69■□□□□ 0.1
TRIM28-205ENST00000595028 SHC2P98077 582 aa15.69■□□□□ 0.1
TRIM28-205ENST00000595028 EIF4HQ15056 248 aaKnown RBP15.69■□□□□ 0.1
TRIM28-205ENST00000595028 SYCP1Q15431 976 aa15.69■□□□□ 0.1
TRIM28-205ENST00000595028 EFHC1Q5JVL4 640 aa15.69■□□□□ 0.1
TRIM28-205ENST00000595028 N4BP2L1Q5TBK1 243 aaPredicted RBP15.69■□□□□ 0.1
TRIM28-205ENST00000595028 TAF3Q5VWG9 929 aa15.69■□□□□ 0.1
TRIM28-205ENST00000595028 RFWD3Q6PCD5 774 aa15.69■□□□□ 0.1
TRIM28-205ENST00000595028 PRR23CQ6ZRP0 262 aa15.69■□□□□ 0.1
TRIM28-205ENST00000595028 SLC26A9Q7LBE3 791 aa15.69■□□□□ 0.1
TRIM28-205ENST00000595028 APTXQ7Z2E3 356 aaKnown RBP15.69■□□□□ 0.1
TRIM28-205ENST00000595028 NOP9Q86U38 636 aaKnown RBP15.69■□□□□ 0.1
TRIM28-205ENST00000595028 DEFB106AQ8N104 65 aa15.69■□□□□ 0.1
TRIM28-205ENST00000595028 TMEM35BQ8NCS4 154 aa15.69■□□□□ 0.1
TRIM28-205ENST00000595028 OLIG1Q8TAK6 271 aa15.69■□□□□ 0.1
TRIM28-205ENST00000595028 HMGB4Q8WW32 186 aa15.69■□□□□ 0.1
TRIM28-205ENST00000595028 TMA16Q96EY4 203 aaKnown RBP15.69■□□□□ 0.1
TRIM28-205ENST00000595028 LOXL4Q96JB6 756 aa15.69■□□□□ 0.1
TRIM28-205ENST00000595028 ZC3H10Q96K80 434 aaKnown RBP15.69■□□□□ 0.1
TRIM28-205ENST00000595028 PRICKLE1Q96MT3 831 aaPredicted RBP15.69■□□□□ 0.1
TRIM28-205ENST00000595028 BPIFA3Q9BQP9 254 aa15.69■□□□□ 0.1
TRIM28-205ENST00000595028 PDCL3Q9H2J4 239 aa15.69■□□□□ 0.1
TRIM28-205ENST00000595028 FAM204AQ9H8W3 233 aa15.69■□□□□ 0.1
TRIM28-205ENST00000595028 CACNA2D2Q9NY47 1150 aa15.69■□□□□ 0.1
TRIM28-205ENST00000595028 BCCIPQ9P287 314 aaKnown RBP eCLIP15.69■□□□□ 0.1
TRIM28-205ENST00000595028 THADAQ6YHU6 1953 aa15.69■□□□□ 0.1
TRIM28-205ENST00000595028 IGF2RP11717 2491 aa15.69■□□□□ 0.1
TRIM28-205ENST00000595028 NUP205Q92621 2012 aa15.68■□□□□ 0.1
TRIM28-205ENST00000595028 GOLGA6L7A0A1B0GV03 622 aa15.68■□□□□ 0.1
TRIM28-205ENST00000595028 A0A1W2PQF6 199 aa15.68■□□□□ 0.1
TRIM28-205ENST00000595028 DCLK1O15075 740 aa15.68■□□□□ 0.1
TRIM28-205ENST00000595028 EPN2O95208 641 aa15.68■□□□□ 0.1
TRIM28-205ENST00000595028 LSM8O95777 96 aaKnown RBP15.68■□□□□ 0.1
TRIM28-205ENST00000595028 MOCS2O96007 188 aaPredicted RBP15.68■□□□□ 0.1
TRIM28-205ENST00000595028 APOEP02649 317 aa15.68■□□□□ 0.1
TRIM28-205ENST00000595028 CDK11BP21127 795 aaKnown RBP15.68■□□□□ 0.1
TRIM28-205ENST00000595028 HLA-FP30511 346 aa15.68■□□□□ 0.1
TRIM28-205ENST00000595028 PLK5Q496M5 336 aa15.68■□□□□ 0.1
TRIM28-205ENST00000595028 USP39Q53GS9 565 aaKnown RBP15.68■□□□□ 0.1
TRIM28-205ENST00000595028 DCAF6Q58WW2 860 aa15.68■□□□□ 0.1
TRIM28-205ENST00000595028 MPP7Q5T2T1 576 aa15.68■□□□□ 0.1
TRIM28-205ENST00000595028 PIK3R6Q5UE93 754 aa15.68■□□□□ 0.1
TRIM28-205ENST00000595028 OR6B2Q6IFH4 312 aa15.68■□□□□ 0.1
TRIM28-205ENST00000595028 SDE2Q6IQ49 451 aa15.68■□□□□ 0.1
TRIM28-205ENST00000595028 C11orf74Q86VG3 221 aa15.68■□□□□ 0.1
TRIM28-205ENST00000595028 ZDHHC17Q8IUH5 632 aa15.68■□□□□ 0.1
TRIM28-205ENST00000595028 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.68■□□□□ 0.1
TRIM28-205ENST00000595028 HJURPQ8NCD3 748 aaPredicted RBP15.68■□□□□ 0.1
TRIM28-205ENST00000595028 UCMAQ8WVF2 138 aa15.68■□□□□ 0.1
TRIM28-205ENST00000595028 ERGIC2Q96RQ1 377 aa15.68■□□□□ 0.1
TRIM28-205ENST00000595028 DDX50Q9BQ39 737 aaKnown RBP15.68■□□□□ 0.1
TRIM28-205ENST00000595028 CD248Q9HCU0 757 aa15.68■□□□□ 0.1
TRIM28-205ENST00000595028 NLRC4Q9NPP4 1024 aa15.68■□□□□ 0.1
TRIM28-205ENST00000595028 NOCTQ9UK39 431 aaKnown RBP15.68■□□□□ 0.1
TRIM28-205ENST00000595028 NBEAQ8NFP9 2946 aa15.67■□□□□ 0.1
TRIM28-205ENST00000595028 TNRC6BQ9UPQ9 1833 aaKnown RBP15.67■□□□□ 0.1
TRIM28-205ENST00000595028 LRRC10BA6NIK2 292 aa15.67■□□□□ 0.1
TRIM28-205ENST00000595028 NPC1O15118 1278 aa15.67■□□□□ 0.1
TRIM28-205ENST00000595028 GRAP2O75791 330 aa15.67■□□□□ 0.1
TRIM28-205ENST00000595028 GFPT2O94808 682 aa15.67■□□□□ 0.1
TRIM28-205ENST00000595028 PROS1P07225 676 aa15.67■□□□□ 0.1
TRIM28-205ENST00000595028 ATP1A3P13637 1013 aa15.67■□□□□ 0.1
TRIM28-205ENST00000595028 GABRG2P18507 467 aa15.67■□□□□ 0.1
TRIM28-205ENST00000595028 SOX5P35711 763 aa15.67■□□□□ 0.1
TRIM28-205ENST00000595028 CDK17Q00537 523 aa15.67■□□□□ 0.1
TRIM28-205ENST00000595028 SLC6A3Q01959 620 aa15.67■□□□□ 0.1
TRIM28-205ENST00000595028 UBXN1Q04323 297 aa15.67■□□□□ 0.1
TRIM28-205ENST00000595028 EIF4EBP2Q13542 120 aaPredicted RBP15.67■□□□□ 0.1
TRIM28-205ENST00000595028 ELF2Q15723 593 aa15.67■□□□□ 0.1
TRIM28-205ENST00000595028 CSRP2Q16527 193 aa15.67■□□□□ 0.1
TRIM28-205ENST00000595028 KLHL40Q2TBA0 621 aa15.67■□□□□ 0.1
TRIM28-205ENST00000595028 ZC3H12AQ5D1E8 599 aaKnown RBP15.67■□□□□ 0.1
TRIM28-205ENST00000595028 ZNF677Q86XU0 584 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms