RNA–Protein interactions for RNA: ENST00000586792.5

ZNF540-204, Transcript of zinc finger protein 540, human

TSL 3 BASIC

Gene ZNF540, Length 564 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZNF540-204	ENST00000586792	HNRNPL	P14866	589 aa	Known RBP eCLIP	5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	CSF2RA	P15509	400 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	RRM1	P23921	792 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	ATIC	P31939	592 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	CYP2C18	P33260	490 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	RFC2	P35250	354 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	TCF7	P36402	384 aa	Predicted RBP	5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	SREBF1	P36956	1147 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	HTR3A	P46098	478 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	FXR1	P51114	621 aa	Known RBP eCLIP	5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	ZNF81	P51508	661 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	AK2	P54819	239 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	CCL23	P55773	120 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	WNT3A	P56704	352 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	EVC	P57679	992 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	IRF9	Q00978	393 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	FAM214A	Q32MH5	1076 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	LRIT3	Q3SXY7	679 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	CEP55	Q53EZ4	464 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	TTC38	Q5R3I4	469 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	TAF3	Q5VWG9	929 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	FAM160B1	Q5W0V3	765 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	GALNT17	Q6IS24	598 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	DOK3	Q7L591	496 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	C1QL2	Q7Z5L3	287 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	RSPH3	Q86UC2	560 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	SESTD1	Q86VW0	696 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	PLA2G4D	Q86XP0	818 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	SUGP1	Q8IWZ8	645 aa	Known RBP	5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	AFAP1L1	Q8TED9	768 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	SEPT1	Q8WYJ6	367 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	CDK5RAP3	Q96JB5	506 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	UIMC1	Q96RL1	719 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	MYCBP	Q99417	103 aa	Predicted RBP	5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	SMAD5	Q99717	465 aa	Known RBP	5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	MXRA8	Q9BRK3	442 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	ZNF577	Q9BSK1	485 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	FAM126A	Q9BYI3	521 aa	Predicted RBP	5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	FTO	Q9C0B1	505 aa	Known RBP eCLIP	5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	ZMYND12	Q9H0C1	365 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	PRO3102	Q9H379	93 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	SMARCAD1	Q9H4L7	1026 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	KIAA1586	Q9HCI6	787 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	KMT5A	Q9NQR1	393 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	TBC1D22B	Q9NU19	505 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	ERAP1	Q9NZ08	941 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	SLC9A2	Q9UBY0	812 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	COQ6	Q9Y2Z9	468 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	KIF3A	Q9Y496	699 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	UBIAD1	Q9Y5Z9	338 aa		5.16	□□□□□ -1.58
ZNF540-204	ENST00000586792	MYH7B	A7E2Y1	1941 aa		5.15	□□□□□ -1.58
ZNF540-204	ENST00000586792	BAZ2B	Q9UIF8	2168 aa	Known RBP	5.15	□□□□□ -1.58
ZNF540-204	ENST00000586792	UBA6	A0AVT1	1052 aa	Predicted RBP	5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	FAM170A	A1A519	330 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792		M0QZ92	97 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	IPO5	O00410	1097 aa	Known RBP	5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	PFKFB2	O60825	505 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	KATNA1	O75449	491 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	NPTXR	O95502	500 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	FGB	P02675	491 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	RPLP2	P05387	115 aa	Known RBP	5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	KCNA2	P16389	499 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	POU3F3	P20264	500 aa	Predicted RBP	5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	MARK3	P27448	753 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	PLA2G5	P39877	138 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	HAL	P42357	657 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	SLC26A2	P50443	739 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	SP2	Q02086	613 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	PPFIA1	Q13136	1202 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	NONO	Q15233	471 aa	Known RBP eCLIP	5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	TOMM20	Q15388	145 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	SAFB	Q15424	915 aa	Known RBP eCLIP	5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	SHH	Q15465	462 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	LONRF1	Q17RB8	773 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	C9orf50	Q5SZB4	431 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	MIS18BP1	Q6P0N0	1132 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	LRRC8D	Q7L1W4	858 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	NIPA1	Q7RTP0	329 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	OVCH1	Q7RTY7	1134 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	DEFB128	Q7Z7B8	93 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	ZBTB46	Q86UZ6	589 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	BLID	Q8IZY5	108 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	CHCHD4	Q8N4Q1	142 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	FAM184A	Q8NB25	1140 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	CPEB3	Q8NE35	698 aa	Known RBP	5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	ZSWIM2	Q8NEG5	633 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	NINJ1	Q92982	152 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	ATP6V0A1	Q93050	837 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	GTF3C6	Q969F1	213 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	SCLY	Q96I15	445 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	ASPSCR1	Q9BZE9	553 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	ENKD1	Q9H0I2	346 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	HDAC6	Q9UBN7	1215 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	MSRA	Q9UJ68	235 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	ZNF180	Q9UJW8	692 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	TPCN1	Q9ULQ1	816 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	CHST2	Q9Y4C5	530 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	GRIN2D	O15399	1336 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	NFASC	O94856	1347 aa		5.15	□□□□□ -1.59
ZNF540-204	ENST00000586792	EMSY	Q7Z589	1322 aa		5.15	□□□□□ -1.59

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