RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 FREM2Q5SZK8 3169 aa12.14□□□□□ -0.47
LIG3-207ENST00000586119 MUC22E2RYF6 1773 aaPredicted RBP12.13□□□□□ -0.47
LIG3-207ENST00000586119 PLXNA2O75051 1894 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 NBEAQ8NFP9 2946 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 APC2O95996 2303 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 MYL1P05976 194 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 ACADMP11310 421 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 LCP1P13796 627 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 RPL13P26373 211 aaKnown RBP12.13□□□□□ -0.47
LIG3-207ENST00000586119 OXTRP30559 389 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 GTF2H1P32780 548 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 CD70P32970 193 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 MATKP42679 507 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 RGS7P49802 495 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 PMS1P54277 932 aaKnown RBP12.13□□□□□ -0.47
LIG3-207ENST00000586119 RPS14P62263 151 aaKnown RBP12.13□□□□□ -0.47
LIG3-207ENST00000586119 KRT85P78386 507 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 ADIGQ0VDE8 80 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 CAMK2GQ13555 558 aaPredicted RBP12.13□□□□□ -0.47
LIG3-207ENST00000586119 FNDC3BQ53EP0 1204 aaKnown RBP12.13□□□□□ -0.47
LIG3-207ENST00000586119 MPPE1Q53F39 396 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 PRAMEF14Q5SWL7 426 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 DBX2Q6ZNG2 339 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 CCDC150Q8NCX0 1101 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 FBXL13Q8NEE6 735 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 RHBDD1Q8TEB9 315 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 CLEC4CQ8WTT0 213 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 HNRNPLLQ8WVV9 542 aaKnown RBP12.13□□□□□ -0.47
LIG3-207ENST00000586119 TFAP2BQ92481 460 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 ERCC4Q92889 916 aaPredicted RBP12.13□□□□□ -0.47
LIG3-207ENST00000586119 PLD4Q96BZ4 506 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 TMA16Q96EY4 203 aaKnown RBP12.13□□□□□ -0.47
LIG3-207ENST00000586119 CDK5RAP1Q96SZ6 601 aaKnown RBP12.13□□□□□ -0.47
LIG3-207ENST00000586119 ZSWIM1Q9BR11 485 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 ZDHHC5Q9C0B5 715 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 LRRC4Q9HBW1 653 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 ABCB8Q9NUT2 735 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 GPSM3Q9Y4H4 160 aa12.13□□□□□ -0.47
LIG3-207ENST00000586119 FASNP49327 2511 aaKnown RBP12.13□□□□□ -0.47
LIG3-207ENST00000586119 ANKRD11Q6UB99 2663 aaPredicted RBP12.13□□□□□ -0.47
LIG3-207ENST00000586119 CELSR3Q9NYQ7 3312 aa12.12□□□□□ -0.47
LIG3-207ENST00000586119 FAM149AA5PLN7 773 aa12.12□□□□□ -0.47
LIG3-207ENST00000586119 RNF225M0QZC1 329 aaPredicted RBP12.12□□□□□ -0.47
LIG3-207ENST00000586119 XPO1O14980 1071 aaKnown RBP12.12□□□□□ -0.47
LIG3-207ENST00000586119 NPC1O15118 1278 aa12.12□□□□□ -0.47
LIG3-207ENST00000586119 TIMM44O43615 452 aa12.12□□□□□ -0.47
LIG3-207ENST00000586119 ZNF202O95125 648 aa12.12□□□□□ -0.47
LIG3-207ENST00000586119 CD19P15391 556 aa12.12□□□□□ -0.47
LIG3-207ENST00000586119 SLC6A4P31645 630 aa12.12□□□□□ -0.47
LIG3-207ENST00000586119 PRCPP42785 496 aa12.12□□□□□ -0.47
LIG3-207ENST00000586119 ZNF132P52740 706 aa12.12□□□□□ -0.47
LIG3-207ENST00000586119 IL9RQ01113 521 aa12.12□□□□□ -0.47
LIG3-207ENST00000586119 ARID5AQ03989 594 aa12.12□□□□□ -0.47
LIG3-207ENST00000586119 ENPEPQ07075 957 aa12.12□□□□□ -0.47
LIG3-207ENST00000586119 PNOCQ13519 176 aa12.12□□□□□ -0.47
LIG3-207ENST00000586119 EIF4HQ15056 248 aaKnown RBP12.12□□□□□ -0.47
LIG3-207ENST00000586119 COL28A1Q2UY09 1125 aa12.12□□□□□ -0.47
LIG3-207ENST00000586119 MBLAC2Q68D91 279 aa12.12□□□□□ -0.47
LIG3-207ENST00000586119 ANKRD40Q6AI12 368 aa12.12□□□□□ -0.47
LIG3-207ENST00000586119 KIAA0907Q7Z7F0 614 aaPredicted RBP12.12□□□□□ -0.47
LIG3-207ENST00000586119 GLRX5Q86SX6 157 aa12.12□□□□□ -0.47
LIG3-207ENST00000586119 ARHGAP18Q8N392 663 aa12.12□□□□□ -0.47
LIG3-207ENST00000586119 BAHD1Q8TBE0 780 aaPredicted RBP12.12□□□□□ -0.47
LIG3-207ENST00000586119 BIRC7Q96CA5 298 aa12.12□□□□□ -0.47
LIG3-207ENST00000586119 ORAI3Q9BRQ5 295 aa12.12□□□□□ -0.47
LIG3-207ENST00000586119 SLC2A11Q9BYW1 496 aa12.12□□□□□ -0.47
LIG3-207ENST00000586119 SCAND2PQ9GZW5 306 aaPredicted RBP12.12□□□□□ -0.47
LIG3-207ENST00000586119 LHX5Q9H2C1 402 aa12.12□□□□□ -0.47
LIG3-207ENST00000586119 CCDC86Q9H6F5 360 aaKnown RBP12.12□□□□□ -0.47
LIG3-207ENST00000586119 STIM2Q9P246 746 aa12.12□□□□□ -0.47
LIG3-207ENST00000586119 APOBEC2Q9Y235 224 aaKnown RBP12.12□□□□□ -0.47
LIG3-207ENST00000586119 RAXQ9Y2V3 346 aa12.12□□□□□ -0.47
LIG3-207ENST00000586119 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.12□□□□□ -0.47
LIG3-207ENST00000586119 NFE2L3Q9Y4A8 694 aa12.12□□□□□ -0.47
LIG3-207ENST00000586119 TRIM49BA6NDI0 452 aa12.11□□□□□ -0.47
LIG3-207ENST00000586119 H0Y8X5 98 aa12.11□□□□□ -0.47
LIG3-207ENST00000586119 TBL1XO60907 577 aa12.11□□□□□ -0.47
LIG3-207ENST00000586119 FSBPO95073 299 aa12.11□□□□□ -0.47
LIG3-207ENST00000586119 PABPC1P11940 636 aaKnown RBP12.11□□□□□ -0.47
LIG3-207ENST00000586119 HARS2P49590 506 aaKnown RBP12.11□□□□□ -0.47
LIG3-207ENST00000586119 NUMBP49757 651 aa12.11□□□□□ -0.47
LIG3-207ENST00000586119 CLDN6P56747 220 aa12.11□□□□□ -0.47
LIG3-207ENST00000586119 CUL2Q13617 745 aa12.11□□□□□ -0.47
LIG3-207ENST00000586119 PKDCCQ504Y2 493 aa12.11□□□□□ -0.47
LIG3-207ENST00000586119 CCDC157Q569K6 752 aa12.11□□□□□ -0.47
LIG3-207ENST00000586119 DCAF17Q5H9S7 520 aaPredicted RBP12.11□□□□□ -0.47
LIG3-207ENST00000586119 ADGRF1Q5T601 910 aa12.11□□□□□ -0.47
LIG3-207ENST00000586119 TCERG1LQ5VWI1 586 aa12.11□□□□□ -0.47
LIG3-207ENST00000586119 PMF1Q6P1K2 205 aa12.11□□□□□ -0.47
LIG3-207ENST00000586119 TMPRSS7Q7RTY8 843 aa12.11□□□□□ -0.47
LIG3-207ENST00000586119 UBR7Q8N806 425 aa12.11□□□□□ -0.47
LIG3-207ENST00000586119 RNF139Q8WU17 664 aa12.11□□□□□ -0.47
LIG3-207ENST00000586119 KAT5Q92993 513 aa12.11□□□□□ -0.47
LIG3-207ENST00000586119 CCDC47Q96A33 483 aaKnown RBP12.11□□□□□ -0.47
LIG3-207ENST00000586119 MYO19Q96H55 970 aa12.11□□□□□ -0.47
LIG3-207ENST00000586119 LMLNQ96KR4 655 aa12.11□□□□□ -0.47
LIG3-207ENST00000586119 EBF2Q9HAK2 575 aa12.11□□□□□ -0.47
LIG3-207ENST00000586119 TM9SF3Q9HD45 589 aa12.11□□□□□ -0.47
LIG3-207ENST00000586119 GGA2Q9UJY4 613 aa12.11□□□□□ -0.47
LIG3-207ENST00000586119 STOML2Q9UJZ1 356 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms