RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 ADCY8P40145 1251 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 SLC11A2P49281 568 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 CXCR3P49682 368 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 GPR15P49685 360 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 RABGGTBP53611 331 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 VSNL1P62760 191 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 RING1Q06587 406 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 TWF1Q12792 350 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 XRCC4Q13426 336 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 PDK1Q15118 436 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 NOMO1Q15155 1222 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 LLGL1Q15334 1064 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 TRIP4Q15650 581 aaPredicted RBP6.4□□□□□ -1.38
LIG3-206ENST00000586058 ATP13A4Q4VNC1 1196 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 ZC3H12AQ5D1E8 599 aaKnown RBP6.4□□□□□ -1.38
LIG3-206ENST00000586058 RABGAP1LQ5R372 815 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 SH3PXD2AQ5TCZ1 1133 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 RWDD4Q6NW29 188 aaKnown RBP6.4□□□□□ -1.38
LIG3-206ENST00000586058 FBXO38Q6PIJ6 1188 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 RFX8Q6ZV50 586 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 TAS1R1Q7RTX1 841 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 ZNF354CQ86Y25 554 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 MIB1Q86YT6 1006 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 LZTR1Q8N653 840 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 TTC9BQ8N6N2 239 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 PRELID2Q8N945 189 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 LEMD2Q8NC56 503 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 ACTL9Q8TC94 416 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 GPR152Q8TDT2 470 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 NSMCE1Q8WV22 266 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 POF1BQ8WVV4 589 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 ATG4AQ8WYN0 398 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 NDRG1Q92597 394 aaKnown RBP6.4□□□□□ -1.38
LIG3-206ENST00000586058 BTN2A3PQ96KV6 586 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 PPP1R2P1Q96PQ5 205 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 HAPLN3Q96S86 360 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 PNKPQ96T60 521 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 ERP44Q9BS26 406 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 TRIM51Q9BSJ1 452 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 KLC2Q9H0B6 622 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 BRD8Q9H0E9 1235 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 RXFP1Q9HBX9 757 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 PCDH9Q9HC56 1237 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 TRPC7Q9HCX4 862 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 ASAH2Q9NR71 780 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 TMEM30AQ9NV96 361 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 GPATCH2LQ9NWQ4 482 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 CXXC1Q9P0U4 656 aaPredicted RBP6.4□□□□□ -1.38
LIG3-206ENST00000586058 WHRNQ9P202 907 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 OR12D3Q9UGF7 316 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 ZMYM5Q9UJ78 669 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 DNMT3LQ9UJW3 386 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 FBXW11Q9UKB1 542 aa6.4□□□□□ -1.38
LIG3-206ENST00000586058 DRG1Q9Y295 367 aaKnown RBP6.4□□□□□ -1.38
LIG3-206ENST00000586058 HBS1LQ9Y450 684 aaKnown RBP6.4□□□□□ -1.38
LIG3-206ENST00000586058 CHD5Q8TDI0 1954 aa6.4□□□□□ -1.39
LIG3-206ENST00000586058 NUP205Q92621 2012 aa6.4□□□□□ -1.39
LIG3-206ENST00000586058 MYO18AQ92614 2054 aaKnown RBP6.4□□□□□ -1.39
LIG3-206ENST00000586058 C3orf70A6NLC5 250 aaPredicted RBP6.39□□□□□ -1.39
LIG3-206ENST00000586058 E7EVH7 732 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 C5orf67F2Z3F1 127 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 KCNN4O15554 427 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 MSI1O43347 362 aaKnown RBP6.39□□□□□ -1.39
LIG3-206ENST00000586058 ATP8B1O43520 1251 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 EFEMP2O95967 443 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 C1RP00736 705 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 CA3P07451 260 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 CD48P09326 243 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 MBL2P11226 248 aaPredicted RBP6.39□□□□□ -1.39
LIG3-206ENST00000586058 H2AFXP16104 143 aaPredicted RBP6.39□□□□□ -1.39
LIG3-206ENST00000586058 PFKLP17858 780 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 TFE3P19532 575 aaPredicted RBP6.39□□□□□ -1.39
LIG3-206ENST00000586058 ITIH2P19823 946 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 MAGEA10P43363 369 aaPredicted RBP6.39□□□□□ -1.39
LIG3-206ENST00000586058 HCAR3P49019 387 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 LMAN1P49257 510 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 VPS41P49754 854 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 ARSEP51690 589 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 BASP1P80723 227 aaKnown RBP6.39□□□□□ -1.39
LIG3-206ENST00000586058 SARNPP82979 210 aaKnown RBP6.39□□□□□ -1.39
LIG3-206ENST00000586058 AP1B1Q10567 949 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 GPM6BQ13491 265 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 NAA30Q147X3 362 aaPredicted RBP6.39□□□□□ -1.39
LIG3-206ENST00000586058 SLMAPQ14BN4 828 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 ANO4Q32M45 955 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 P3H1Q32P28 736 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 CFAP58Q5T655 872 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 TTC39BQ5VTQ0 682 aaPredicted RBP6.39□□□□□ -1.39
LIG3-206ENST00000586058 IZUMO3Q5VZ72 239 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 PPP2R2DQ66LE6 453 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 SLC9A4Q6AI14 798 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 TXNRD3NBQ6F5E7 133 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 ITPRIPL1Q6GPH6 555 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 TIGD7Q6NT04 549 aaPredicted RBP6.39□□□□□ -1.39
LIG3-206ENST00000586058 KLHDC10Q6PID8 442 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 C1orf228Q6PIY5 440 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 ARHGEF18Q6ZSZ5 1173 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 C16orf59Q7L2K0 433 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 ZC3H18Q86VM9 953 aaKnown RBP6.39□□□□□ -1.39
LIG3-206ENST00000586058 CHSY1Q86X52 802 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms