RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 CREB3O43889 395 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 MFSD11O43934 449 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 KIAA0754O94854 1291 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 OAZ2O95190 189 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 CCL5P13501 91 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 KRT15P19012 456 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 GCAP28676 217 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 ELK3P41970 407 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 CACNA2D1P54289 1103 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 PITX1P78337 314 aaPredicted RBP11.62□□□□□ -0.55
LIG3-204ENST00000585740 COG7P83436 770 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 IL9RQ01113 521 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 SEMA3BQ13214 749 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 MSS51Q4VC12 460 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 PAN2Q504Q3 1202 aaKnown RBP11.62□□□□□ -0.55
LIG3-204ENST00000585740 ANKRD20A2Q5SQ80 823 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 ANKRD20A1Q5TYW2 823 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 ANKRD20A3Q5VUR7 823 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 BSPRYQ5W0U4 402 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 SRLQ86TD4 932 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 RTN4RL1Q86UN2 441 aaPredicted RBP11.62□□□□□ -0.55
LIG3-204ENST00000585740 CCNJLQ8IV13 435 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 SRRM1Q8IYB3 904 aaKnown RBP11.62□□□□□ -0.55
LIG3-204ENST00000585740 ABI1Q8IZP0 508 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 CACNA2D3Q8IZS8 1091 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 CYP4X1Q8N118 509 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 PYROXD2Q8N2H3 581 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 ARHGAP18Q8N392 663 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 OR10T2Q8NGX3 314 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 FBF1Q8TES7 1133 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 CKAP2Q8WWK9 683 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 LINC01599Q8WXQ3 324 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 SEPT8Q92599 483 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 ZNF317Q96PQ6 595 aaPredicted RBP11.62□□□□□ -0.55
LIG3-204ENST00000585740 COLEC11Q9BWP8 271 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.62□□□□□ -0.55
LIG3-204ENST00000585740 ZCWPW1Q9H0M4 648 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 RNF208Q9H0X6 261 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 OSBPL2Q9H1P3 480 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 TRABDQ9H4I3 376 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 WDCPQ9H6R7 721 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 ABCC13Q9NSE7 274 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 TBK1Q9UHD2 729 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 CHMP2BQ9UQN3 213 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 IKBKGQ9Y6K9 419 aa11.62□□□□□ -0.55
LIG3-204ENST00000585740 OR6C75A6NL08 312 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 PARNO95453 639 aaKnown RBP11.61□□□□□ -0.55
LIG3-204ENST00000585740 CPP00450 1065 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 APRTP07741 180 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 ERCC2P18074 760 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 SSTR1P30872 391 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 GRIK1P39086 918 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 MAGEA11P43364 429 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 OR1G1P47890 313 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 CDK7P50613 346 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 YWHAGP61981 247 aaKnown RBP eCLIP11.61□□□□□ -0.55
LIG3-204ENST00000585740 GAD2Q05329 585 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 ZNF33AQ06730 810 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 MBTPS1Q14703 1052 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 PARP6Q2NL67 630 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 CLLU1OSQ5K130 101 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 HP1BP3Q5SSJ5 553 aaPredicted RBP11.61□□□□□ -0.55
LIG3-204ENST00000585740 LGSNQ5TDP6 509 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 BTBD8Q5XKL5 378 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 CAPN12Q6ZSI9 719 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 YTHDF3Q7Z739 585 aaKnown RBP11.61□□□□□ -0.55
LIG3-204ENST00000585740 TAB3Q8N5C8 712 aaPredicted RBP11.61□□□□□ -0.55
LIG3-204ENST00000585740 ANKS4BQ8N8V4 417 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 HASPINQ8TF76 798 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 MAGEB18Q96M61 343 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 PAFAH2Q99487 392 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 PRMT1Q99873 361 aaKnown RBP11.61□□□□□ -0.55
LIG3-204ENST00000585740 OXCT2Q9BYC2 517 aaPredicted RBP11.61□□□□□ -0.55
LIG3-204ENST00000585740 RABEP2Q9H5N1 569 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 TMEM30AQ9NV96 361 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 TBC1D13Q9NVG8 400 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 TMLHEQ9NVH6 421 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 SAMD15Q9P1V8 674 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 IGSF9Q9P2J2 1179 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 RRP15Q9Y3B9 282 aaKnown RBP11.61□□□□□ -0.55
LIG3-204ENST00000585740 PCDHB7Q9Y5E2 793 aa11.61□□□□□ -0.55
LIG3-204ENST00000585740 MYO18AQ92614 2054 aaKnown RBP11.61□□□□□ -0.55
LIG3-204ENST00000585740 GOLGA6L7A0A1B0GV03 622 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 DNM1LO00429 736 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 PITPNM1O00562 1244 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 IRAK2O43187 625 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 TADA2AO75478 443 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 BANF1O75531 89 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 DDHD2O94830 711 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 ZWINTO95229 277 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 IGLV3-25P01717 112 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 INHBAP08476 426 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 VIMP08670 466 aaKnown RBP11.6□□□□□ -0.55
LIG3-204ENST00000585740 VAV1P15498 845 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 MAGEA3P43357 314 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 AP1B1Q10567 949 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 SMARCB1Q12824 385 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 IFRD2Q12894 506 aaPredicted RBP11.6□□□□□ -0.55
LIG3-204ENST00000585740 ELAVL2Q12926 359 aaKnown RBP11.6□□□□□ -0.55
LIG3-204ENST00000585740 LRRC8BQ6P9F7 803 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms