RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 FAM173BQ6P4H8 233 aa13.32□□□□□ -0.28
SS18-219ENST00000581570 CHST9Q7L1S5 443 aa13.32□□□□□ -0.28
SS18-219ENST00000581570 RSRC2Q7L4I2 434 aaKnown RBP13.32□□□□□ -0.28
SS18-219ENST00000581570 SPACA3Q8IXA5 215 aa13.32□□□□□ -0.28
SS18-219ENST00000581570 FAM217AQ8IXS0 508 aa13.32□□□□□ -0.28
SS18-219ENST00000581570 GANCQ8TET4 914 aa13.32□□□□□ -0.28
SS18-219ENST00000581570 SPOCK2Q92563 424 aa13.32□□□□□ -0.28
SS18-219ENST00000581570 TSC1Q92574 1164 aa13.32□□□□□ -0.28
SS18-219ENST00000581570 TAF4BQ92750 862 aa13.32□□□□□ -0.28
SS18-219ENST00000581570 GOLGA1Q92805 767 aa13.32□□□□□ -0.28
SS18-219ENST00000581570 TWNKQ96RR1 684 aa13.32□□□□□ -0.28
SS18-219ENST00000581570 ARID3AQ99856 593 aa13.32□□□□□ -0.28
SS18-219ENST00000581570 TFIP11Q9UBB9 837 aaKnown RBP13.32□□□□□ -0.28
SS18-219ENST00000581570 SUN2Q9UH99 717 aa13.32□□□□□ -0.28
SS18-219ENST00000581570 WNT1P04628 370 aa13.31□□□□□ -0.28
SS18-219ENST00000581570 GLDCP23378 1020 aa13.31□□□□□ -0.28
SS18-219ENST00000581570 HOXD9P28356 352 aaPredicted RBP13.31□□□□□ -0.28
SS18-219ENST00000581570 ASPAP45381 313 aa13.31□□□□□ -0.28
SS18-219ENST00000581570 ILKQ13418 452 aa13.31□□□□□ -0.28
SS18-219ENST00000581570 SLC39A14Q15043 492 aa13.31□□□□□ -0.28
SS18-219ENST00000581570 ZACNQ401N2 412 aa13.31□□□□□ -0.28
SS18-219ENST00000581570 ADIPOR2Q86V24 386 aa13.31□□□□□ -0.28
SS18-219ENST00000581570 ARHGAP18Q8N392 663 aa13.31□□□□□ -0.28
SS18-219ENST00000581570 NT5C1AQ9BXI3 368 aa13.31□□□□□ -0.28
SS18-219ENST00000581570 DUSP16Q9BY84 665 aa13.31□□□□□ -0.28
SS18-219ENST00000581570 CUEDC2Q9H467 287 aa13.31□□□□□ -0.28
SS18-219ENST00000581570 EBF2Q9HAK2 575 aa13.31□□□□□ -0.28
SS18-219ENST00000581570 GDF3Q9NR23 364 aa13.31□□□□□ -0.28
SS18-219ENST00000581570 AASDHPPTQ9NRN7 309 aa13.31□□□□□ -0.28
SS18-219ENST00000581570 ABCB8Q9NUT2 735 aa13.31□□□□□ -0.28
SS18-219ENST00000581570 SCML1Q9UN30 329 aa13.31□□□□□ -0.28
SS18-219ENST00000581570 KNL1Q8NG31 2342 aa13.31□□□□□ -0.28
SS18-219ENST00000581570 KALRNO60229 2985 aa13.31□□□□□ -0.28
SS18-219ENST00000581570 KNTC1P50748 2209 aa13.31□□□□□ -0.28
SS18-219ENST00000581570 ASS1P00966 412 aaKnown RBP13.3□□□□□ -0.28
SS18-219ENST00000581570 ATP5BP06576 529 aaKnown RBP13.3□□□□□ -0.28
SS18-219ENST00000581570 DLDP09622 509 aaKnown RBP13.3□□□□□ -0.28
SS18-219ENST00000581570 PABPC1P11940 636 aaKnown RBP13.3□□□□□ -0.28
SS18-219ENST00000581570 CD38P28907 300 aa13.3□□□□□ -0.28
SS18-219ENST00000581570 GALCP54803 685 aa13.3□□□□□ -0.28
SS18-219ENST00000581570 DLG4P78352 724 aa13.3□□□□□ -0.28
SS18-219ENST00000581570 INCA1Q0VD86 236 aa13.3□□□□□ -0.28
SS18-219ENST00000581570 KCNH2Q12809 1159 aa13.3□□□□□ -0.28
SS18-219ENST00000581570 E2F4Q16254 413 aa13.3□□□□□ -0.28
SS18-219ENST00000581570 KNOP1Q1ED39 458 aaKnown RBP13.3□□□□□ -0.28
SS18-219ENST00000581570 TBC1D25Q3MII6 688 aa13.3□□□□□ -0.28
SS18-219ENST00000581570 MBLAC2Q68D91 279 aa13.3□□□□□ -0.28
SS18-219ENST00000581570 CNNM4Q6P4Q7 775 aa13.3□□□□□ -0.28
SS18-219ENST00000581570 USP30Q70CQ3 517 aa13.3□□□□□ -0.28
SS18-219ENST00000581570 UNC13DQ70J99 1090 aa13.3□□□□□ -0.28
SS18-219ENST00000581570 KIAA0907Q7Z7F0 614 aaPredicted RBP13.3□□□□□ -0.28
SS18-219ENST00000581570 ERICH1Q86X53 443 aa13.3□□□□□ -0.28
SS18-219ENST00000581570 AHI1Q8N157 1196 aa13.3□□□□□ -0.28
SS18-219ENST00000581570 CACTIN-AS1Q8N1I8 211 aa13.3□□□□□ -0.28
SS18-219ENST00000581570 PLD4Q96BZ4 506 aa13.3□□□□□ -0.28
SS18-219ENST00000581570 DHX58Q96C10 678 aa13.3□□□□□ -0.28
SS18-219ENST00000581570 TMA16Q96EY4 203 aaKnown RBP13.3□□□□□ -0.28
SS18-219ENST00000581570 WBP1Q96G27 269 aa13.3□□□□□ -0.28
SS18-219ENST00000581570 LGMNQ99538 433 aa13.3□□□□□ -0.28
SS18-219ENST00000581570 C7orf25Q9BPX7 421 aa13.3□□□□□ -0.28
SS18-219ENST00000581570 PABPC3Q9H361 631 aaKnown RBP13.3□□□□□ -0.28
SS18-219ENST00000581570 SLC39A2Q9NP94 309 aa13.3□□□□□ -0.28
SS18-219ENST00000581570 FBXL12Q9NXK8 326 aa13.3□□□□□ -0.28
SS18-219ENST00000581570 PPP4R2Q9NY27 417 aa13.3□□□□□ -0.28
SS18-219ENST00000581570 GGA2Q9UJY4 613 aa13.3□□□□□ -0.28
SS18-219ENST00000581570 CLCA2Q9UQC9 943 aa13.3□□□□□ -0.28
SS18-219ENST00000581570 MORC2Q9Y6X9 1032 aaPredicted RBP13.3□□□□□ -0.28
SS18-219ENST00000581570 CKAP5Q14008 2032 aa13.3□□□□□ -0.28
SS18-219ENST00000581570 NUMA1Q14980 2115 aa13.3□□□□□ -0.28
SS18-219ENST00000581570 MUC22E2RYF6 1773 aaPredicted RBP13.3□□□□□ -0.28
SS18-219ENST00000581570 TMEM131Q92545 1883 aa13.29□□□□□ -0.28
SS18-219ENST00000581570 A0A1W2PR77 199 aa13.29□□□□□ -0.28
SS18-219ENST00000581570 NEFLP07196 543 aa13.29□□□□□ -0.28
SS18-219ENST00000581570 CKMT2P17540 419 aa13.29□□□□□ -0.28
SS18-219ENST00000581570 POLR2EP19388 210 aaKnown RBP13.29□□□□□ -0.28
SS18-219ENST00000581570 EPHA8P29322 1005 aaPredicted RBP13.29□□□□□ -0.28
SS18-219ENST00000581570 ARRB1P49407 418 aaPredicted RBP13.29□□□□□ -0.28
SS18-219ENST00000581570 HARS2P49590 506 aaKnown RBP13.29□□□□□ -0.28
SS18-219ENST00000581570 YWHAGP61981 247 aaKnown RBP eCLIP13.29□□□□□ -0.28
SS18-219ENST00000581570 RHDQ02161 417 aa13.29□□□□□ -0.28
SS18-219ENST00000581570 EHHADHQ08426 723 aa13.29□□□□□ -0.28
SS18-219ENST00000581570 SFSWAPQ12872 951 aaKnown RBP13.29□□□□□ -0.28
SS18-219ENST00000581570 BNIP3Q12983 259 aa13.29□□□□□ -0.28
SS18-219ENST00000581570 TRIP4Q15650 581 aaPredicted RBP13.29□□□□□ -0.28
SS18-219ENST00000581570 PPP1R26Q5T8A7 1209 aaPredicted RBP13.29□□□□□ -0.28
SS18-219ENST00000581570 NCEH1Q6PIU2 408 aa13.29□□□□□ -0.28
SS18-219ENST00000581570 SV2AQ7L0J3 742 aa13.29□□□□□ -0.28
SS18-219ENST00000581570 ZC3H3Q8IXZ2 948 aaKnown RBP13.29□□□□□ -0.28
SS18-219ENST00000581570 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.29□□□□□ -0.28
SS18-219ENST00000581570 GOLGA5Q8TBA6 731 aa13.29□□□□□ -0.28
SS18-219ENST00000581570 NAF1Q96HR8 494 aaKnown RBP13.29□□□□□ -0.28
SS18-219ENST00000581570 USP28Q96RU2 1077 aa13.29□□□□□ -0.28
SS18-219ENST00000581570 RSPH9Q9H1X1 276 aaPredicted RBP13.29□□□□□ -0.28
SS18-219ENST00000581570 MTG2Q9H4K7 406 aa13.29□□□□□ -0.28
SS18-219ENST00000581570 CLMPQ9H6B4 373 aa13.29□□□□□ -0.28
SS18-219ENST00000581570 CYP3A43Q9HB55 503 aa13.29□□□□□ -0.28
SS18-219ENST00000581570 COL5A1P20908 1838 aaPredicted RBP13.29□□□□□ -0.28
SS18-219ENST00000581570 A0A1W2PP55 124 aa13.28□□□□□ -0.28
SS18-219ENST00000581570 LRRC72A6NJI9 287 aa13.28□□□□□ -0.28
SS18-219ENST00000581570 WNT9AO14904 365 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 91.2 ms