RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 POLE2P56282 527 aa7.2□□□□□ -1.26
SS18-214ENST00000580003 ATPAF1Q5TC12 328 aaPredicted RBP7.2□□□□□ -1.26
SS18-214ENST00000580003 ZNF425Q6IV72 752 aa7.2□□□□□ -1.26
SS18-214ENST00000580003 C1QL2Q7Z5L3 287 aa7.2□□□□□ -1.26
SS18-214ENST00000580003 UBE2Q1Q7Z7E8 422 aa7.2□□□□□ -1.26
SS18-214ENST00000580003 NANOGP1Q8N7R0 232 aa7.2□□□□□ -1.26
SS18-214ENST00000580003 KAT2BQ92831 832 aa7.2□□□□□ -1.26
SS18-214ENST00000580003 MCRS1Q96EZ8 462 aa7.2□□□□□ -1.26
SS18-214ENST00000580003 SLC39A13Q96H72 371 aa7.2□□□□□ -1.26
SS18-214ENST00000580003 CCDC134Q9H6E4 229 aa7.2□□□□□ -1.26
SS18-214ENST00000580003 TAGLN3Q9UI15 199 aa7.2□□□□□ -1.26
SS18-214ENST00000580003 SETD1BQ9UPS6 1966 aaKnown RBP7.2□□□□□ -1.26
SS18-214ENST00000580003 SPATA31A5Q5VU36 1347 aa7.2□□□□□ -1.26
SS18-214ENST00000580003 SPATA31A7Q8IWB4 1347 aa7.2□□□□□ -1.26
SS18-214ENST00000580003 LOC105369274A0A096LPK9 316 aa7.19□□□□□ -1.26
SS18-214ENST00000580003 LOC102723532A0A0G2JNH3 316 aa7.19□□□□□ -1.26
SS18-214ENST00000580003 TOP3BO95985 862 aaKnown RBP7.19□□□□□ -1.26
SS18-214ENST00000580003 ITGA2BP08514 1039 aa7.19□□□□□ -1.26
SS18-214ENST00000580003 CTSAP10619 480 aa7.19□□□□□ -1.26
SS18-214ENST00000580003 ST6GAL1P15907 406 aa7.19□□□□□ -1.26
SS18-214ENST00000580003 HOXD9P28356 352 aaPredicted RBP7.19□□□□□ -1.26
SS18-214ENST00000580003 HOXA7P31268 230 aaPredicted RBP7.19□□□□□ -1.26
SS18-214ENST00000580003 CHAF1AQ13111 956 aaPredicted RBP7.19□□□□□ -1.26
SS18-214ENST00000580003 ANXA2RQ3ZCQ2 193 aa7.19□□□□□ -1.26
SS18-214ENST00000580003 EARS2Q5JPH6 523 aaKnown RBP7.19□□□□□ -1.26
SS18-214ENST00000580003 C11orf87Q6NUJ2 197 aa7.19□□□□□ -1.26
SS18-214ENST00000580003 SHC4Q6S5L8 630 aa7.19□□□□□ -1.26
SS18-214ENST00000580003 DHRS13Q6UX07 377 aa7.19□□□□□ -1.26
SS18-214ENST00000580003 RFX6Q8HWS3 928 aa7.19□□□□□ -1.26
SS18-214ENST00000580003 OR4N4Q8N0Y3 316 aa7.19□□□□□ -1.26
SS18-214ENST00000580003 ATG16L2Q8NAA4 619 aa7.19□□□□□ -1.26
SS18-214ENST00000580003 BCAS4Q8TDM0 211 aa7.19□□□□□ -1.26
SS18-214ENST00000580003 POF1BQ8WVV4 589 aa7.19□□□□□ -1.26
SS18-214ENST00000580003 RSC1A1Q92681 617 aa7.19□□□□□ -1.26
SS18-214ENST00000580003 EID2BQ96D98 161 aa7.19□□□□□ -1.26
SS18-214ENST00000580003 TRMT61AQ96FX7 289 aaKnown RBP7.19□□□□□ -1.26
SS18-214ENST00000580003 GPR78Q96P69 363 aa7.19□□□□□ -1.26
SS18-214ENST00000580003 TMEM184CQ9NVA4 438 aa7.19□□□□□ -1.26
SS18-214ENST00000580003 LRFN1Q9P244 771 aa7.19□□□□□ -1.26
SS18-214ENST00000580003 B3GNT3Q9Y2A9 372 aa7.19□□□□□ -1.26
SS18-214ENST00000580003 TNFRSF18Q9Y5U5 241 aa7.19□□□□□ -1.26
SS18-214ENST00000580003 EMSYQ7Z589 1322 aa7.19□□□□□ -1.26
SS18-214ENST00000580003 C2CD4BA6NLJ0 364 aa7.18□□□□□ -1.26
SS18-214ENST00000580003 KIF28PB7ZC32 967 aa7.18□□□□□ -1.26
SS18-214ENST00000580003 M0QYT0 321 aa7.18□□□□□ -1.26
SS18-214ENST00000580003 SYT5O00445 386 aa7.18□□□□□ -1.26
SS18-214ENST00000580003 PPEF2O14830 753 aa7.18□□□□□ -1.26
SS18-214ENST00000580003 FGBP02675 491 aa7.18□□□□□ -1.26
SS18-214ENST00000580003 AKR1A1P14550 325 aa7.18□□□□□ -1.26
SS18-214ENST00000580003 TFEBP19484 476 aa7.18□□□□□ -1.26
SS18-214ENST00000580003 PDIA3P30101 505 aaKnown RBP7.18□□□□□ -1.26
SS18-214ENST00000580003 PTGER1P34995 402 aa7.18□□□□□ -1.26
SS18-214ENST00000580003 DMWDQ09019 674 aa7.18□□□□□ -1.26
SS18-214ENST00000580003 RABEP1Q15276 862 aa7.18□□□□□ -1.26
SS18-214ENST00000580003 DEF8Q6ZN54 512 aa7.18□□□□□ -1.26
SS18-214ENST00000580003 MRPL10Q7Z7H8 261 aaKnown RBP7.18□□□□□ -1.26
SS18-214ENST00000580003 ANKRD13BQ86YJ7 626 aa7.18□□□□□ -1.26
SS18-214ENST00000580003 ADPRHL1Q8NDY3 354 aa7.18□□□□□ -1.26
SS18-214ENST00000580003 C16orf52Q8NHV5 167 aa7.18□□□□□ -1.26
SS18-214ENST00000580003 ABHD14AQ9BUJ0 271 aa7.18□□□□□ -1.26
SS18-214ENST00000580003 KATNAL1Q9BW62 490 aa7.18□□□□□ -1.26
SS18-214ENST00000580003 SCNM1Q9BWG6 230 aa7.18□□□□□ -1.26
SS18-214ENST00000580003 SPRTNQ9H040 489 aaPredicted RBP7.18□□□□□ -1.26
SS18-214ENST00000580003 MTMR4Q9NYA4 1195 aa7.18□□□□□ -1.26
SS18-214ENST00000580003 IPO11Q9UI26 975 aaKnown RBP7.18□□□□□ -1.26
SS18-214ENST00000580003 HERC5Q9UII4 1024 aaKnown RBP7.18□□□□□ -1.26
SS18-214ENST00000580003 RAB21Q9UL25 225 aa7.18□□□□□ -1.26
SS18-214ENST00000580003 SLC22A23A1A5C7 686 aa7.17□□□□□ -1.26
SS18-214ENST00000580003 MOSPD3O75425 235 aa7.17□□□□□ -1.26
SS18-214ENST00000580003 LARGE1O95461 756 aa7.17□□□□□ -1.26
SS18-214ENST00000580003 ALDOAP04075 364 aaKnown RBP7.17□□□□□ -1.26
SS18-214ENST00000580003 GRK5P34947 590 aa7.17□□□□□ -1.26
SS18-214ENST00000580003 TLE3Q04726 772 aa7.17□□□□□ -1.26
SS18-214ENST00000580003 BLMHQ13867 455 aa7.17□□□□□ -1.26
SS18-214ENST00000580003 BTBD16Q32M84 506 aa7.17□□□□□ -1.26
SS18-214ENST00000580003 C10orf25Q5T742 122 aa7.17□□□□□ -1.26
SS18-214ENST00000580003 SLC39A5Q6ZMH5 540 aa7.17□□□□□ -1.26
SS18-214ENST00000580003 ZNF793Q6ZN11 406 aa7.17□□□□□ -1.26
SS18-214ENST00000580003 FAM57BQ71RH2 274 aa7.17□□□□□ -1.26
SS18-214ENST00000580003 RHPN2Q8IUC4 686 aa7.17□□□□□ -1.26
SS18-214ENST00000580003 HMGB4Q8WW32 186 aa7.17□□□□□ -1.26
SS18-214ENST00000580003 COQ8BQ96D53 544 aa7.17□□□□□ -1.26
SS18-214ENST00000580003 RMDN3Q96TC7 470 aa7.17□□□□□ -1.26
SS18-214ENST00000580003 TMEM79Q9BSE2 394 aa7.17□□□□□ -1.26
SS18-214ENST00000580003 RTKNQ9BST9 563 aa7.17□□□□□ -1.26
SS18-214ENST00000580003 GATA5Q9BWX5 397 aaPredicted RBP7.17□□□□□ -1.26
SS18-214ENST00000580003 ERVK-5Q9HDB9 667 aa7.17□□□□□ -1.26
SS18-214ENST00000580003 MLXIPLQ9NP71 852 aa7.17□□□□□ -1.26
SS18-214ENST00000580003 ZBTB1Q9Y2K1 713 aa7.17□□□□□ -1.26
SS18-214ENST00000580003 TBC1D3DA0A087WVF3 549 aa7.16□□□□□ -1.26
SS18-214ENST00000580003 TBC1D3IA0A087WXS9 549 aa7.16□□□□□ -1.26
SS18-214ENST00000580003 TBC1D3EA0A087X179 549 aa7.16□□□□□ -1.26
SS18-214ENST00000580003 TBC1D3KA0A087X1G2 549 aa7.16□□□□□ -1.26
SS18-214ENST00000580003 TBC1D3BA6NDS4 549 aa7.16□□□□□ -1.26
SS18-214ENST00000580003 TBC1D3FA6NER0 549 aaPredicted RBP7.16□□□□□ -1.26
SS18-214ENST00000580003 C3orf70A6NLC5 250 aaPredicted RBP7.16□□□□□ -1.26
SS18-214ENST00000580003 EFCAB8A8MWE9 144 aa7.16□□□□□ -1.26
SS18-214ENST00000580003 TBC1D3LB9A6J9 549 aa7.16□□□□□ -1.26
SS18-214ENST00000580003 TLR2O60603 784 aa7.16□□□□□ -1.26
SS18-214ENST00000580003 PPP6R2O75170 966 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 169.4 ms