RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 SLC39A4Q6P5W5 647 aa17.05■□□□□ 0.32
VPS53-218ENST00000575207 VASH2Q86V25 355 aa17.05■□□□□ 0.32
VPS53-218ENST00000575207 ZNF366Q8N895 744 aa17.05■□□□□ 0.32
VPS53-218ENST00000575207 TPCN2Q8NHX9 752 aa17.05■□□□□ 0.32
VPS53-218ENST00000575207 ARRDC3Q96B67 414 aa17.05■□□□□ 0.32
VPS53-218ENST00000575207 CYLDQ9NQC7 956 aa17.05■□□□□ 0.32
VPS53-218ENST00000575207 NLGN3Q9NZ94 848 aa17.05■□□□□ 0.32
VPS53-218ENST00000575207 SERGEFQ9UGK8 458 aa17.05■□□□□ 0.32
VPS53-218ENST00000575207 DNM3Q9UQ16 869 aa17.05■□□□□ 0.32
VPS53-218ENST00000575207 HIVEP3Q5T1R4 2406 aa17.04■□□□□ 0.32
VPS53-218ENST00000575207 FAM92AA1XBS5 289 aa17.04■□□□□ 0.32
VPS53-218ENST00000575207 PLD2O14939 933 aa17.04■□□□□ 0.32
VPS53-218ENST00000575207 LATO43561 262 aa17.04■□□□□ 0.32
VPS53-218ENST00000575207 TLR5O60602 858 aa17.04■□□□□ 0.32
VPS53-218ENST00000575207 ITGB3P05106 788 aa17.04■□□□□ 0.32
VPS53-218ENST00000575207 ALPPL2P10696 532 aa17.04■□□□□ 0.32
VPS53-218ENST00000575207 ARID5AQ03989 594 aa17.04■□□□□ 0.32
VPS53-218ENST00000575207 GOLGA8FQ08AF8 430 aa17.04■□□□□ 0.32
VPS53-218ENST00000575207 GOLGA8DPQ0D2H9 430 aa17.04■□□□□ 0.32
VPS53-218ENST00000575207 C1orf127Q8N9H9 656 aa17.04■□□□□ 0.32
VPS53-218ENST00000575207 KCNB2Q92953 911 aa17.04■□□□□ 0.32
VPS53-218ENST00000575207 RSPH9Q9H1X1 276 aaPredicted RBP17.04■□□□□ 0.32
VPS53-218ENST00000575207 BRMS1Q9HCU9 246 aa17.04■□□□□ 0.32
VPS53-218ENST00000575207 DKK3Q9UBP4 350 aa17.04■□□□□ 0.32
VPS53-218ENST00000575207 ESPL1Q14674 2120 aa17.03■□□□□ 0.32
VPS53-218ENST00000575207 CLDN1O95832 211 aa17.03■□□□□ 0.32
VPS53-218ENST00000575207 KRT7P08729 469 aa17.03■□□□□ 0.32
VPS53-218ENST00000575207 PDX1P52945 283 aa17.03■□□□□ 0.32
VPS53-218ENST00000575207 SFSWAPQ12872 951 aaKnown RBP17.03■□□□□ 0.32
VPS53-218ENST00000575207 SCARA3Q6AZY7 606 aa17.03■□□□□ 0.32
VPS53-218ENST00000575207 C9orf43Q8TAL5 461 aaPredicted RBP17.03■□□□□ 0.32
VPS53-218ENST00000575207 GANCQ8TET4 914 aa17.03■□□□□ 0.32
VPS53-218ENST00000575207 SLC12A9Q9BXP2 914 aa17.03■□□□□ 0.32
VPS53-218ENST00000575207 ELOVL4Q9GZR5 314 aa17.03■□□□□ 0.32
VPS53-218ENST00000575207 NEUROG2Q9H2A3 272 aa17.03■□□□□ 0.32
VPS53-218ENST00000575207 ZNF71Q9NQZ8 489 aaPredicted RBP17.03■□□□□ 0.32
VPS53-218ENST00000575207 CLEC4EQ9ULY5 219 aa17.03■□□□□ 0.32
VPS53-218ENST00000575207 NIPBLQ6KC79 2804 aaeCLIP17.02■□□□□ 0.32
VPS53-218ENST00000575207 RP1P56715 2156 aa17.02■□□□□ 0.32
VPS53-218ENST00000575207 NVLO15381 856 aaKnown RBP17.02■□□□□ 0.32
VPS53-218ENST00000575207 TBX18O95935 607 aa17.02■□□□□ 0.32
VPS53-218ENST00000575207 PRKCGP05129 697 aa17.02■□□□□ 0.32
VPS53-218ENST00000575207 PLCG1P19174 1290 aa17.02■□□□□ 0.32
VPS53-218ENST00000575207 MCM7P33993 719 aa17.02■□□□□ 0.32
VPS53-218ENST00000575207 PDE4CQ08493 712 aa17.02■□□□□ 0.32
VPS53-218ENST00000575207 EIF3IQ13347 325 aaKnown RBP17.02■□□□□ 0.32
VPS53-218ENST00000575207 FNDC3BQ53EP0 1204 aaKnown RBP17.02■□□□□ 0.32
VPS53-218ENST00000575207 SCAMP5Q8TAC9 235 aa17.02■□□□□ 0.32
VPS53-218ENST00000575207 ZNF274Q96GC6 653 aaPredicted RBP17.02■□□□□ 0.32
VPS53-218ENST00000575207 SLC2A11Q9BYW1 496 aa17.02■□□□□ 0.32
VPS53-218ENST00000575207 FZD4Q9ULV1 537 aa17.02■□□□□ 0.32
VPS53-218ENST00000575207 PLA2G4CQ9UP65 541 aa17.02■□□□□ 0.32
VPS53-218ENST00000575207 SVILO95425 2214 aa17.02■□□□□ 0.32
VPS53-218ENST00000575207 MYH11P35749 1972 aa17.01■□□□□ 0.31
VPS53-218ENST00000575207 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.01■□□□□ 0.31
VPS53-218ENST00000575207 VPS4BO75351 444 aa17.01■□□□□ 0.31
VPS53-218ENST00000575207 IL18RAPO95256 599 aa17.01■□□□□ 0.31
VPS53-218ENST00000575207 PDGFRBP09619 1106 aa17.01■□□□□ 0.31
VPS53-218ENST00000575207 SCP2P22307 547 aa17.01■□□□□ 0.31
VPS53-218ENST00000575207 GNLYP22749 145 aa17.01■□□□□ 0.31
VPS53-218ENST00000575207 ZNF177Q13360 481 aaPredicted RBP17.01■□□□□ 0.31
VPS53-218ENST00000575207 MDH1BQ5I0G3 518 aa17.01■□□□□ 0.31
VPS53-218ENST00000575207 HS2ST1Q7LGA3 356 aa17.01■□□□□ 0.31
VPS53-218ENST00000575207 DTX1Q86Y01 620 aa17.01■□□□□ 0.31
VPS53-218ENST00000575207 GALNT11Q8NCW6 608 aa17.01■□□□□ 0.31
VPS53-218ENST00000575207 DUSP23Q9BVJ7 150 aa17.01■□□□□ 0.31
VPS53-218ENST00000575207 KLHL11Q9NVR0 708 aa17.01■□□□□ 0.31
VPS53-218ENST00000575207 DONSONQ9NYP3 566 aa17.01■□□□□ 0.31
VPS53-218ENST00000575207 LARSQ9P2J5 1176 aaKnown RBP17.01■□□□□ 0.31
VPS53-218ENST00000575207 VPS4AQ9UN37 437 aa17.01■□□□□ 0.31
VPS53-218ENST00000575207 RIOK3O14730 519 aaKnown RBP17■□□□□ 0.31
VPS53-218ENST00000575207 PIAS2O75928 621 aa17■□□□□ 0.31
VPS53-218ENST00000575207 CDKL5O76039 1030 aa17■□□□□ 0.31
VPS53-218ENST00000575207 WARSP23381 471 aaKnown RBP17■□□□□ 0.31
VPS53-218ENST00000575207 UGT1A5P35504 534 aa17■□□□□ 0.31
VPS53-218ENST00000575207 CHKAP35790 457 aa17■□□□□ 0.31
VPS53-218ENST00000575207 ATP5C1P36542 298 aaKnown RBP17■□□□□ 0.31
VPS53-218ENST00000575207 PGFP49763 221 aa17■□□□□ 0.31
VPS53-218ENST00000575207 MLLT10P55197 1068 aa17■□□□□ 0.31
VPS53-218ENST00000575207 RAD51AP2Q09MP3 1159 aa17■□□□□ 0.31
VPS53-218ENST00000575207 STK3Q13188 491 aa17■□□□□ 0.31
VPS53-218ENST00000575207 TOB2Q14106 344 aaPredicted RBP17■□□□□ 0.31
VPS53-218ENST00000575207 SDK2Q58EX2 2172 aa17■□□□□ 0.31
VPS53-218ENST00000575207 ADALQ6DHV7 355 aa17■□□□□ 0.31
VPS53-218ENST00000575207 CRELD2Q6UXH1 353 aaPredicted RBP17■□□□□ 0.31
VPS53-218ENST00000575207 JAMLQ86YT9 394 aa17■□□□□ 0.31
VPS53-218ENST00000575207 CYB5D2Q8WUJ1 264 aa17■□□□□ 0.31
VPS53-218ENST00000575207 ZNF518BQ9C0D4 1074 aa17■□□□□ 0.31
VPS53-218ENST00000575207 COMMD8Q9NX08 183 aa17■□□□□ 0.31
VPS53-218ENST00000575207 ARHGAP20Q9P2F6 1191 aa17■□□□□ 0.31
VPS53-218ENST00000575207 SEL1LQ9UBV2 794 aa17■□□□□ 0.31
VPS53-218ENST00000575207 A0A1W2PP55 124 aa16.99■□□□□ 0.31
VPS53-218ENST00000575207 EME2A4GXA9 379 aaPredicted RBP16.99■□□□□ 0.31
VPS53-218ENST00000575207 NEMP2A6NFY4 417 aa16.99■□□□□ 0.31
VPS53-218ENST00000575207 K7ESM1 405 aa16.99■□□□□ 0.31
VPS53-218ENST00000575207 SCAMP1O15126 338 aa16.99■□□□□ 0.31
VPS53-218ENST00000575207 FXR2P51116 673 aaKnown RBP eCLIP16.99■□□□□ 0.31
VPS53-218ENST00000575207 TFAMQ00059 246 aaKnown RBP16.99■□□□□ 0.31
VPS53-218ENST00000575207 KLRB1Q12918 225 aa16.99■□□□□ 0.31
VPS53-218ENST00000575207 FBXO39Q8N4B4 442 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms