RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 KIAA1257Q9ULG3 409 aa21.98■■□□□ 1.11
VPS53-216ENST00000574029 ZZEF1O43149 2961 aa21.97■■□□□ 1.11
VPS53-216ENST00000574029 O00370 1275 aa21.97■■□□□ 1.11
VPS53-216ENST00000574029 CER1O95813 267 aa21.97■■□□□ 1.11
VPS53-216ENST00000574029 SETSIPP0DME0 302 aa21.97■■□□□ 1.11
VPS53-216ENST00000574029 FKBP3Q00688 224 aaKnown RBP21.97■■□□□ 1.11
VPS53-216ENST00000574029 ZNF658Q5TYW1 1059 aaPredicted RBP21.97■■□□□ 1.11
VPS53-216ENST00000574029 CHST9Q7L1S5 443 aa21.97■■□□□ 1.11
VPS53-216ENST00000574029 SIX6OS1Q8N1H7 587 aa21.97■■□□□ 1.11
VPS53-216ENST00000574029 TSG101Q99816 390 aa21.97■■□□□ 1.11
VPS53-216ENST00000574029 LHX5Q9H2C1 402 aa21.97■■□□□ 1.11
VPS53-216ENST00000574029 GAREM1Q9H706 876 aa21.97■■□□□ 1.11
VPS53-216ENST00000574029 PLA2G4CQ9UP65 541 aa21.97■■□□□ 1.11
VPS53-216ENST00000574029 BAHCC1Q9P281 2608 aa21.97■■□□□ 1.11
VPS53-216ENST00000574029 FAM208BQ5VWN6 2430 aa21.96■■□□□ 1.11
VPS53-216ENST00000574029 TAF4O00268 1085 aa21.96■■□□□ 1.11
VPS53-216ENST00000574029 MATKP42679 507 aa21.96■■□□□ 1.11
VPS53-216ENST00000574029 PMS1P54277 932 aaKnown RBP21.96■■□□□ 1.11
VPS53-216ENST00000574029 DAOAP59103 153 aa21.96■■□□□ 1.11
VPS53-216ENST00000574029 PTPRNQ16849 979 aa21.96■■□□□ 1.11
VPS53-216ENST00000574029 HLA-BQ31612 363 aa21.96■■□□□ 1.11
VPS53-216ENST00000574029 FNDC3BQ53EP0 1204 aaKnown RBP21.96■■□□□ 1.11
VPS53-216ENST00000574029 ANKRD40Q6AI12 368 aa21.96■■□□□ 1.11
VPS53-216ENST00000574029 MSANTD2Q6P1R3 559 aa21.96■■□□□ 1.11
VPS53-216ENST00000574029 DBX2Q6ZNG2 339 aa21.96■■□□□ 1.11
VPS53-216ENST00000574029 FAM124AQ86V42 546 aa21.96■■□□□ 1.11
VPS53-216ENST00000574029 AHI1Q8N157 1196 aa21.96■■□□□ 1.11
VPS53-216ENST00000574029 PNPLA1Q8N8W4 532 aa21.96■■□□□ 1.11
VPS53-216ENST00000574029 CYB5D2Q8WUJ1 264 aa21.96■■□□□ 1.11
VPS53-216ENST00000574029 SLC35C1Q96A29 364 aa21.96■■□□□ 1.11
VPS53-216ENST00000574029 IRX2Q9BZI1 471 aaPredicted RBP21.96■■□□□ 1.11
VPS53-216ENST00000574029 TM7SF3Q9NS93 570 aa21.96■■□□□ 1.11
VPS53-216ENST00000574029 ABCB8Q9NUT2 735 aa21.96■■□□□ 1.11
VPS53-216ENST00000574029 GGA2Q9UJY4 613 aa21.96■■□□□ 1.11
VPS53-216ENST00000574029 APOBEC2Q9Y235 224 aaKnown RBP21.96■■□□□ 1.11
VPS53-216ENST00000574029 FNDC3AQ9Y2H6 1198 aaKnown RBP21.96■■□□□ 1.11
VPS53-216ENST00000574029 MSI1O43347 362 aaKnown RBP21.95■■□□□ 1.1
VPS53-216ENST00000574029 GABBR2O75899 941 aa21.95■■□□□ 1.1
VPS53-216ENST00000574029 IGLV3-27P01718 113 aa21.95■■□□□ 1.1
VPS53-216ENST00000574029 PABPC1P11940 636 aaKnown RBP21.95■■□□□ 1.1
VPS53-216ENST00000574029 TBXAS1P24557 533 aaPredicted RBP21.95■■□□□ 1.1
VPS53-216ENST00000574029 ACSL1P33121 698 aa21.95■■□□□ 1.1
VPS53-216ENST00000574029 SGSHP51688 502 aa21.95■■□□□ 1.1
VPS53-216ENST00000574029 BECN1Q14457 450 aa21.95■■□□□ 1.1
VPS53-216ENST00000574029 LCLAT1Q6UWP7 414 aa21.95■■□□□ 1.1
VPS53-216ENST00000574029 SLCO6A1Q86UG4 719 aa21.95■■□□□ 1.1
VPS53-216ENST00000574029 PROSER1Q86XN7 944 aa21.95■■□□□ 1.1
VPS53-216ENST00000574029 BAHD1Q8TBE0 780 aaPredicted RBP21.95■■□□□ 1.1
VPS53-216ENST00000574029 SETD7Q8WTS6 366 aaKnown RBP21.95■■□□□ 1.1
VPS53-216ENST00000574029 SLC35F5Q8WV83 523 aa21.95■■□□□ 1.1
VPS53-216ENST00000574029 GSDMAQ96QA5 445 aa21.95■■□□□ 1.1
VPS53-216ENST00000574029 C6orf106Q9H6K1 298 aaPredicted RBP21.95■■□□□ 1.1
VPS53-216ENST00000574029 FBRSQ9HAH7 460 aa21.95■■□□□ 1.1
VPS53-216ENST00000574029 GDPD2Q9HCC8 539 aa21.95■■□□□ 1.1
VPS53-216ENST00000574029 KIAA1522Q9P206 1035 aaPredicted RBP21.95■■□□□ 1.1
VPS53-216ENST00000574029 ARMCX3Q9UH62 379 aaPredicted RBP21.95■■□□□ 1.1
VPS53-216ENST00000574029 PCDHGB2Q9Y5G2 931 aa21.95■■□□□ 1.1
VPS53-216ENST00000574029 PLXNB3Q9ULL4 1909 aa21.95■■□□□ 1.1
VPS53-216ENST00000574029 PAEPP09466 180 aa21.94■■□□□ 1.1
VPS53-216ENST00000574029 LCP1P13796 627 aa21.94■■□□□ 1.1
VPS53-216ENST00000574029 RPS14P62263 151 aaKnown RBP21.94■■□□□ 1.1
VPS53-216ENST00000574029 ZBTB16Q05516 673 aa21.94■■□□□ 1.1
VPS53-216ENST00000574029 RING1Q06587 406 aa21.94■■□□□ 1.1
VPS53-216ENST00000574029 LRMPQ12912 555 aa21.94■■□□□ 1.1
VPS53-216ENST00000574029 MPP7Q5T2T1 576 aa21.94■■□□□ 1.1
VPS53-216ENST00000574029 MBLAC2Q68D91 279 aa21.94■■□□□ 1.1
VPS53-216ENST00000574029 CCNI2Q6ZMN8 369 aaPredicted RBP21.94■■□□□ 1.1
VPS53-216ENST00000574029 FMR1NBQ8N0W7 255 aaPredicted RBP21.94■■□□□ 1.1
VPS53-216ENST00000574029 ZNF366Q8N895 744 aa21.94■■□□□ 1.1
VPS53-216ENST00000574029 IRGQQ8WZA9 623 aa21.94■■□□□ 1.1
VPS53-216ENST00000574029 TFAP2BQ92481 460 aa21.94■■□□□ 1.1
VPS53-216ENST00000574029 OSGEPQ9NPF4 335 aa21.94■■□□□ 1.1
VPS53-216ENST00000574029 PRSS16Q9NQE7 514 aa21.94■■□□□ 1.1
VPS53-216ENST00000574029 ZBTB32Q9Y2Y4 487 aaPredicted RBP21.94■■□□□ 1.1
VPS53-216ENST00000574029 SLCO1B1Q9Y6L6 691 aa21.94■■□□□ 1.1
VPS53-216ENST00000574029 PTPRBP23467 1997 aa21.94■■□□□ 1.1
VPS53-216ENST00000574029 A0A1B0GVT2 93 aa21.93■■□□□ 1.1
VPS53-216ENST00000574029 DLDP09622 509 aaKnown RBP21.93■■□□□ 1.1
VPS53-216ENST00000574029 CSNK1EP49674 416 aaKnown RBP21.93■■□□□ 1.1
VPS53-216ENST00000574029 AFF3P51826 1226 aaKnown RBP21.93■■□□□ 1.1
VPS53-216ENST00000574029 LRRC63Q05C16 580 aa21.93■■□□□ 1.1
VPS53-216ENST00000574029 SCAPQ12770 1279 aa21.93■■□□□ 1.1
VPS53-216ENST00000574029 PIK3R6Q5UE93 754 aa21.93■■□□□ 1.1
VPS53-216ENST00000574029 PMF1Q6P1K2 205 aa21.93■■□□□ 1.1
VPS53-216ENST00000574029 LRSAM1Q6UWE0 723 aa21.93■■□□□ 1.1
VPS53-216ENST00000574029 WFDC5Q8TCV5 224 aa21.93■■□□□ 1.1
VPS53-216ENST00000574029 TMEM131Q92545 1883 aa21.92■■□□□ 1.1
VPS53-216ENST00000574029 TRIM49BA6NDI0 452 aa21.92■■□□□ 1.1
VPS53-216ENST00000574029 IRAK2O43187 625 aa21.92■■□□□ 1.1
VPS53-216ENST00000574029 ATP5BP06576 529 aaKnown RBP21.92■■□□□ 1.1
VPS53-216ENST00000574029 SLC6A4P31645 630 aa21.92■■□□□ 1.1
VPS53-216ENST00000574029 CD70P32970 193 aa21.92■■□□□ 1.1
VPS53-216ENST00000574029 CNGA2Q16280 664 aa21.92■■□□□ 1.1
VPS53-216ENST00000574029 FAM133BQ5BKY9 247 aaKnown RBP21.92■■□□□ 1.1
VPS53-216ENST00000574029 RFWD3Q6PCD5 774 aa21.92■■□□□ 1.1
VPS53-216ENST00000574029 TMEM270Q6UE05 265 aa21.92■■□□□ 1.1
VPS53-216ENST00000574029 UNC45BQ8IWX7 931 aa21.92■■□□□ 1.1
VPS53-216ENST00000574029 SPATA20Q8TB22 786 aa21.92■■□□□ 1.1
VPS53-216ENST00000574029 SNX19Q92543 992 aa21.92■■□□□ 1.1
VPS53-216ENST00000574029 AZIN2Q96A70 460 aa21.92■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 961.8 ms