RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 GRK7Q8WTQ7 553 aa14.15□□□□□ -0.14
CCDC40-209ENST00000573474 ATG4AQ8WYN0 398 aa14.15□□□□□ -0.14
CCDC40-209ENST00000573474 P3H4Q92791 437 aa14.15□□□□□ -0.14
CCDC40-209ENST00000573474 PLD4Q96BZ4 506 aa14.15□□□□□ -0.14
CCDC40-209ENST00000573474 HAUS1Q96CS2 278 aa14.15□□□□□ -0.14
CCDC40-209ENST00000573474 KLF16Q9BXK1 252 aaPredicted RBP14.15□□□□□ -0.14
CCDC40-209ENST00000573474 PRKD2Q9BZL6 878 aa14.15□□□□□ -0.14
CCDC40-209ENST00000573474 RNF38Q9H0F5 515 aa14.15□□□□□ -0.14
CCDC40-209ENST00000573474 ATXN3LQ9H3M9 355 aa14.15□□□□□ -0.14
CCDC40-209ENST00000573474 ANKZF1Q9H8Y5 726 aa14.15□□□□□ -0.14
CCDC40-209ENST00000573474 TRPC7Q9HCX4 862 aa14.15□□□□□ -0.14
CCDC40-209ENST00000573474 ARHGEF4Q9NR80 690 aa14.15□□□□□ -0.14
CCDC40-209ENST00000573474 DRG1Q9Y295 367 aaKnown RBP14.15□□□□□ -0.14
CCDC40-209ENST00000573474 SNX10Q9Y5X0 201 aa14.15□□□□□ -0.14
CCDC40-209ENST00000573474 CHD9Q3L8U1 2897 aa14.14□□□□□ -0.15
CCDC40-209ENST00000573474 MTCL1Q9Y4B5 1905 aaKnown RBP14.14□□□□□ -0.15
CCDC40-209ENST00000573474 SPDYE4A6NLX3 237 aa14.14□□□□□ -0.15
CCDC40-209ENST00000573474 RFXAPO00287 272 aa14.14□□□□□ -0.15
CCDC40-209ENST00000573474 LRIG2O94898 1065 aa14.14□□□□□ -0.15
CCDC40-209ENST00000573474 OLFM2O95897 454 aa14.14□□□□□ -0.15
CCDC40-209ENST00000573474 MBL2P11226 248 aaPredicted RBP14.14□□□□□ -0.15
CCDC40-209ENST00000573474 HDCP19113 662 aa14.14□□□□□ -0.15
CCDC40-209ENST00000573474 PTGIRP43119 386 aa14.14□□□□□ -0.15
CCDC40-209ENST00000573474 KCNJ1P48048 391 aa14.14□□□□□ -0.15
CCDC40-209ENST00000573474 NR2C2P49116 596 aa14.14□□□□□ -0.15
CCDC40-209ENST00000573474 HARS2P49590 506 aaKnown RBP14.14□□□□□ -0.15
CCDC40-209ENST00000573474 VCPP55072 806 aaKnown RBP14.14□□□□□ -0.15
CCDC40-209ENST00000573474 MRPS25P82663 173 aaKnown RBP14.14□□□□□ -0.15
CCDC40-209ENST00000573474 BYSLQ13895 437 aaKnown RBP14.14□□□□□ -0.15
CCDC40-209ENST00000573474 TXNDC8Q6A555 127 aa14.14□□□□□ -0.15
CCDC40-209ENST00000573474 C1orf228Q6PIY5 440 aa14.14□□□□□ -0.15
CCDC40-209ENST00000573474 PDZD4Q76G19 769 aaPredicted RBP14.14□□□□□ -0.15
CCDC40-209ENST00000573474 SLC35B2Q8TB61 432 aa14.14□□□□□ -0.15
CCDC40-209ENST00000573474 ACTL9Q8TC94 416 aa14.14□□□□□ -0.15
CCDC40-209ENST00000573474 RUBCNQ92622 972 aa14.14□□□□□ -0.15
CCDC40-209ENST00000573474 SLCO2A1Q92959 643 aa14.14□□□□□ -0.15
CCDC40-209ENST00000573474 NKD2Q969F2 451 aaPredicted RBP14.14□□□□□ -0.15
CCDC40-209ENST00000573474 AZIN2Q96A70 460 aa14.14□□□□□ -0.15
CCDC40-209ENST00000573474 EPC1Q9H2F5 836 aa14.14□□□□□ -0.15
CCDC40-209ENST00000573474 DNMT3BQ9UBC3 853 aaKnown RBP14.14□□□□□ -0.15
CCDC40-209ENST00000573474 SAE1Q9UBE0 346 aaPredicted RBP14.14□□□□□ -0.15
CCDC40-209ENST00000573474 XPO7Q9UIA9 1087 aaKnown RBP14.14□□□□□ -0.15
CCDC40-209ENST00000573474 DNPEPQ9ULA0 475 aa14.14□□□□□ -0.15
CCDC40-209ENST00000573474 HS3ST4Q9Y661 456 aa14.14□□□□□ -0.15
CCDC40-209ENST00000573474 CCDC195A0A1B0GUA6 201 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 A0A1W2PRU2 124 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 SOBPA7XYQ1 873 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 MCF2LO15068 1137 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 DCLK1O15075 740 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 TTI1O43156 1089 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 PAPLNO95428 1278 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 ECEL1O95672 775 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 RHOP08100 348 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 SRGAP2BP0DMP2 458 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 PECAM1P16284 738 aaPredicted RBP14.13□□□□□ -0.15
CCDC40-209ENST00000573474 ERCC2P18074 760 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 DDX6P26196 483 aaKnown RBP eCLIP14.13□□□□□ -0.15
CCDC40-209ENST00000573474 EPHB2P29323 1055 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 HOXC13P31276 330 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 SLC11A2P49281 568 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 KCNQ1P51787 676 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 EIF3EP60228 445 aaKnown RBP14.13□□□□□ -0.15
CCDC40-209ENST00000573474 CYP4F8P98187 520 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 SLC7A5Q01650 507 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 NOMO1Q15155 1222 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 ARHGAP15Q53QZ3 475 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 PIK3R6Q5UE93 754 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 MANEALQ5VSG8 457 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 NCBP2-AS2Q69YL0 99 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 NPNTQ6UXI9 565 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 LRRC31Q6UY01 552 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 SYDE1Q6ZW31 735 aaPredicted RBP14.13□□□□□ -0.15
CCDC40-209ENST00000573474 BZW1Q7L1Q6 419 aaKnown RBP14.13□□□□□ -0.15
CCDC40-209ENST00000573474 ARL14EPQ8N8R7 260 aaPredicted RBP14.13□□□□□ -0.15
CCDC40-209ENST00000573474 ZNF707Q96C28 371 aaPredicted RBP14.13□□□□□ -0.15
CCDC40-209ENST00000573474 TBC1D31Q96DN5 1066 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 FAM118BQ9BPY3 351 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 PARD6BQ9BYG5 372 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 GKN1Q9NS71 199 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 ETNK2Q9NVF9 386 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 DZANK1Q9NVP4 752 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 HCFC1R1Q9NWW0 138 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 ZNF148Q9UQR1 794 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 CLUHO75153 1309 aa14.13□□□□□ -0.15
CCDC40-209ENST00000573474 LAMA2P24043 3122 aaKnown RBP14.13□□□□□ -0.15
CCDC40-209ENST00000573474 TRAV19A0A0A6YYK7 116 aa14.12□□□□□ -0.15
CCDC40-209ENST00000573474 E9PAM4 449 aa14.12□□□□□ -0.15
CCDC40-209ENST00000573474 ZNF197O14709 1029 aa14.12□□□□□ -0.15
CCDC40-209ENST00000573474 FGF10O15520 208 aaPredicted RBP14.12□□□□□ -0.15
CCDC40-209ENST00000573474 ACSL4O60488 711 aa14.12□□□□□ -0.15
CCDC40-209ENST00000573474 STC2O76061 302 aa14.12□□□□□ -0.15
CCDC40-209ENST00000573474 HEXIM1O94992 359 aaKnown RBP14.12□□□□□ -0.15
CCDC40-209ENST00000573474 ITGAVP06756 1048 aa14.12□□□□□ -0.15
CCDC40-209ENST00000573474 MCM3P25205 808 aa14.12□□□□□ -0.15
CCDC40-209ENST00000573474 SLC7A9P82251 487 aa14.12□□□□□ -0.15
CCDC40-209ENST00000573474 XRCC4Q13426 336 aa14.12□□□□□ -0.15
CCDC40-209ENST00000573474 AUHQ13825 339 aaKnown RBP14.12□□□□□ -0.15
CCDC40-209ENST00000573474 KCNC3Q14003 757 aa14.12□□□□□ -0.15
CCDC40-209ENST00000573474 PAFAH1B3Q15102 231 aaKnown RBP14.12□□□□□ -0.15
CCDC40-209ENST00000573474 OASLQ15646 514 aaKnown RBP14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms