RNA–Protein interactions for RNA: ENST00000570484.1

CTDNEP1-204, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 2

Gene CTDNEP1, Length 393 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-204ENST00000570484 GAREM2Q75VX8 874 aa6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 NT5DC3Q86UY8 548 aa6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 CHSY1Q86X52 802 aa6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 MAP7D3Q8IWC1 876 aa6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 CMTM8Q8IZV2 173 aa6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 ZNF276Q8N554 614 aa6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 ARL14EPQ8N8R7 260 aaPredicted RBP6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 KCTD6Q8NC69 237 aa6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 KIF18AQ8NI77 898 aa6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 TRAF3IP1Q8TDR0 691 aaPredicted RBP6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 TEKT4Q8WW24 435 aa6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 NTAN1Q96AB6 310 aa6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 PGAP3Q96FM1 320 aaPredicted RBP6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 BTN2A3PQ96KV6 586 aa6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 PSMB7Q99436 277 aa6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 DDX50Q9BQ39 737 aaKnown RBP6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 ARHGAP9Q9BRR9 750 aa6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 SNRNP25Q9BV90 132 aaKnown RBP6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 CALN1Q9BXU9 219 aa6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 DCLK3Q9C098 648 aa6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 TKTL2Q9H0I9 626 aa6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 DHX35Q9H5Z1 703 aaKnown RBP6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 TASP1Q9H6P5 420 aa6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 UBE2ZQ9H832 354 aaPredicted RBP6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 WDR6Q9NNW5 1121 aaKnown RBP6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 KLHL11Q9NVR0 708 aa6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 PACSIN2Q9UNF0 486 aaPredicted RBP6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 FAM50BQ9Y247 325 aa6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 CPQQ9Y646 472 aa6.83□□□□□ -1.32
CTDNEP1-204ENST00000570484 F5H5T6 163 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 H3BQ06 376 aaPredicted RBP6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 H3BRJ5 948 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 EEF2KO00418 725 aaKnown RBP6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 DAPK3O43293 454 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 CREB3O43889 395 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 OLFM2O95897 454 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 TBX18O95935 607 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 IGLV3-25P01717 112 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 ATP1A1P05023 1023 aaKnown RBP6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 FYNP06241 537 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 TCP1P17987 556 aaKnown RBP6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 CORO1AP31146 461 aaKnown RBP6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 CCR2P41597 374 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 CXCR3P49682 368 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 PGFP49763 221 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 ZNF135P52742 658 aaPredicted RBP6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 ATXN1P54253 815 aaKnown RBP6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 CDH6P55285 790 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 TAS2R40P59535 323 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 TPI1P60174 286 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 PITX1P78337 314 aaPredicted RBP6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 SLC7A9P82251 487 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 SCAPQ12770 1279 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 SMAD4Q13485 552 aaKnown RBP6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 PPP2R5DQ14738 602 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 CTC1Q2NKJ3 1217 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 LINC01559Q495D7 138 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 KCNT1Q5JUK3 1230 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 RABGAP1LQ5R372 815 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 ERMARDQ5T6L9 678 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 SH3PXD2AQ5TCZ1 1133 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 MEI1Q5TIA1 1274 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 OTUD1Q5VV17 481 aaPredicted RBP6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 SYCE2Q6PIF2 218 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 LRRC31Q6UY01 552 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 TMEM150AQ86TG1 271 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 PSTKQ8IV42 348 aaKnown RBP6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 CCDC117Q8IWD4 279 aaPredicted RBP6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 NPAS3Q8IXF0 933 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 KATNAL2Q8IYT4 538 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 CCDC185Q8N715 623 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 SMRP1Q8NCR6 262 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 ITFG1Q8TB96 612 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 ZSCAN18Q8TBC5 510 aaPredicted RBP6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 CENPIQ92674 756 aaPredicted RBP6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 NT5C3BQ969T7 300 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 ACSF2Q96CM8 615 aaPredicted RBP6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 TCEAL4Q96EI5 215 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 HES6Q96HZ4 224 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 CDK15Q96Q40 435 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 WDR24Q96S15 920 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 NAP1L3Q99457 506 aaPredicted RBP6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 LRRC3Q9BY71 257 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 CARD9Q9H257 536 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 GPATCH2LQ9NWQ4 482 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 GDE1Q9NZC3 331 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 CLEC1BQ9P126 229 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 CFAP97Q9P2B7 532 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 SNX12Q9UMY4 172 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 ARHGAP26Q9UNA1 814 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 ZNF510Q9Y2H8 683 aa6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 USP15Q9Y4E8 981 aaPredicted RBP6.82□□□□□ -1.32
CTDNEP1-204ENST00000570484 PLXNA3P51805 1871 aa6.81□□□□□ -1.32
CTDNEP1-204ENST00000570484 MYO16Q9Y6X6 1858 aa6.81□□□□□ -1.32
CTDNEP1-204ENST00000570484 GOLGA6L10A0A0M3HER8 536 aa6.81□□□□□ -1.32
CTDNEP1-204ENST00000570484 KCNU1A8MYU2 1149 aa6.81□□□□□ -1.32
CTDNEP1-204ENST00000570484 PGRMC1O00264 195 aaKnown RBP6.81□□□□□ -1.32
CTDNEP1-204ENST00000570484 LEFTY2O00292 366 aa6.81□□□□□ -1.32
CTDNEP1-204ENST00000570484 TNRC18O15417 2968 aaPredicted RBP6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms