RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 C10orf120Q5SQS8 335 aa18.94■□□□□ 0.62
CLK3-227ENST00000570296 TRAPPC11Q7Z392 1133 aa18.94■□□□□ 0.62
CLK3-227ENST00000570296 WDR49Q8IV35 697 aa18.94■□□□□ 0.62
CLK3-227ENST00000570296 GPD1LQ8N335 351 aa18.94■□□□□ 0.62
CLK3-227ENST00000570296 ZNF366Q8N895 744 aa18.94■□□□□ 0.62
CLK3-227ENST00000570296 ZMIZ2Q8NF64 920 aa18.94■□□□□ 0.62
CLK3-227ENST00000570296 GANCQ8TET4 914 aa18.94■□□□□ 0.62
CLK3-227ENST00000570296 LLPHQ9BRT6 129 aaKnown RBP18.94■□□□□ 0.62
CLK3-227ENST00000570296 MTPAPQ9NVV4 582 aaKnown RBP eCLIP18.94■□□□□ 0.62
CLK3-227ENST00000570296 TJP2Q9UDY2 1190 aa18.94■□□□□ 0.62
CLK3-227ENST00000570296 ITPR2Q14571 2701 aa18.93■□□□□ 0.62
CLK3-227ENST00000570296 TRIM38O00635 465 aa18.93■□□□□ 0.62
CLK3-227ENST00000570296 WNT9AO14904 365 aa18.93■□□□□ 0.62
CLK3-227ENST00000570296 KIAA0391O15091 583 aaKnown RBP18.93■□□□□ 0.62
CLK3-227ENST00000570296 ITGB2P05107 769 aa18.93■□□□□ 0.62
CLK3-227ENST00000570296 RARGP13631 454 aa18.93■□□□□ 0.62
CLK3-227ENST00000570296 ITGB6P18564 788 aa18.93■□□□□ 0.62
CLK3-227ENST00000570296 UBA7P41226 1012 aa18.93■□□□□ 0.62
CLK3-227ENST00000570296 INHBCP55103 352 aa18.93■□□□□ 0.62
CLK3-227ENST00000570296 KCNJ12Q14500 433 aa18.93■□□□□ 0.62
CLK3-227ENST00000570296 TADA2BQ86TJ2 420 aa18.93■□□□□ 0.62
CLK3-227ENST00000570296 SYCP3Q8IZU3 236 aa18.93■□□□□ 0.62
CLK3-227ENST00000570296 CPXM2Q8N436 756 aa18.93■□□□□ 0.62
CLK3-227ENST00000570296 OR2T34Q8NGX1 318 aa18.93■□□□□ 0.62
CLK3-227ENST00000570296 WFIKKN2Q8TEU8 576 aa18.93■□□□□ 0.62
CLK3-227ENST00000570296 SERAC1Q96JX3 654 aa18.93■□□□□ 0.62
CLK3-227ENST00000570296 TNIP3Q96KP6 325 aa18.93■□□□□ 0.62
CLK3-227ENST00000570296 SLC46A1Q96NT5 459 aa18.93■□□□□ 0.62
CLK3-227ENST00000570296 SMOQ99835 787 aa18.93■□□□□ 0.62
CLK3-227ENST00000570296 SEMA3CQ99985 751 aa18.93■□□□□ 0.62
CLK3-227ENST00000570296 RSPH9Q9H1X1 276 aaPredicted RBP18.93■□□□□ 0.62
CLK3-227ENST00000570296 CSNK1G1Q9HCP0 422 aa18.93■□□□□ 0.62
CLK3-227ENST00000570296 FBXL12Q9NXK8 326 aa18.93■□□□□ 0.62
CLK3-227ENST00000570296 CYP26A1O43174 497 aa18.92■□□□□ 0.62
CLK3-227ENST00000570296 GP1BAP07359 652 aa18.92■□□□□ 0.62
CLK3-227ENST00000570296 TLE1Q04724 770 aa18.92■□□□□ 0.62
CLK3-227ENST00000570296 HS1BP3Q53T59 392 aa18.92■□□□□ 0.62
CLK3-227ENST00000570296 RILPL1Q5EBL4 403 aa18.92■□□□□ 0.62
CLK3-227ENST00000570296 FUKQ8N0W3 1084 aa18.92■□□□□ 0.62
CLK3-227ENST00000570296 ZNF276Q8N554 614 aa18.92■□□□□ 0.62
CLK3-227ENST00000570296 MFSD2AQ8NA29 543 aa18.92■□□□□ 0.62
CLK3-227ENST00000570296 DDI1Q8WTU0 396 aa18.92■□□□□ 0.62
CLK3-227ENST00000570296 CYB5D2Q8WUJ1 264 aa18.92■□□□□ 0.62
CLK3-227ENST00000570296 LARP4BQ92615 738 aaKnown RBP18.92■□□□□ 0.62
CLK3-227ENST00000570296 CCNL2Q96S94 520 aaPredicted RBP18.92■□□□□ 0.62
CLK3-227ENST00000570296 ARHGAP9Q9BRR9 750 aa18.92■□□□□ 0.62
CLK3-227ENST00000570296 GZF1Q9H116 711 aaPredicted RBP18.92■□□□□ 0.62
CLK3-227ENST00000570296 PCIF1Q9H4Z3 704 aa18.92■□□□□ 0.62
CLK3-227ENST00000570296 NMUR1Q9HB89 426 aa18.92■□□□□ 0.62
CLK3-227ENST00000570296 SUN2Q9UH99 717 aa18.92■□□□□ 0.62
CLK3-227ENST00000570296 PCDHB13Q9Y5F0 798 aa18.92■□□□□ 0.62
CLK3-227ENST00000570296 CLEC18AA5D8T8 446 aa18.91■□□□□ 0.62
CLK3-227ENST00000570296 ZNF233A6NK53 670 aa18.91■□□□□ 0.62
CLK3-227ENST00000570296 STAU1O95793 577 aaKnown RBP18.91■□□□□ 0.62
CLK3-227ENST00000570296 CST3P01034 146 aaPredicted RBP18.91■□□□□ 0.62
CLK3-227ENST00000570296 CKMT1AP12532 417 aa18.91■□□□□ 0.62
CLK3-227ENST00000570296 CORO1AP31146 461 aaKnown RBP18.91■□□□□ 0.62
CLK3-227ENST00000570296 HMGN5P82970 282 aaKnown RBP18.91■□□□□ 0.62
CLK3-227ENST00000570296 COG7P83436 770 aa18.91■□□□□ 0.62
CLK3-227ENST00000570296 CLN3Q13286 438 aa18.91■□□□□ 0.62
CLK3-227ENST00000570296 CLEC18BQ6UXF7 455 aa18.91■□□□□ 0.62
CLK3-227ENST00000570296 IQCHQ86VS3 1027 aa18.91■□□□□ 0.62
CLK3-227ENST00000570296 SPATS2Q86XZ4 545 aaKnown RBP18.91■□□□□ 0.62
CLK3-227ENST00000570296 CLEC18CQ8NCF0 446 aa18.91■□□□□ 0.62
CLK3-227ENST00000570296 OR4C6Q8NH72 309 aa18.91■□□□□ 0.62
CLK3-227ENST00000570296 HPS3Q969F9 1004 aa18.91■□□□□ 0.62
CLK3-227ENST00000570296 GRAMD1AQ96CP6 724 aa18.91■□□□□ 0.62
CLK3-227ENST00000570296 NUDT5Q9UKK9 219 aa18.91■□□□□ 0.62
CLK3-227ENST00000570296 AGO1Q9UL18 857 aaKnown RBP18.91■□□□□ 0.62
CLK3-227ENST00000570296 FZD4Q9ULV1 537 aa18.91■□□□□ 0.62
CLK3-227ENST00000570296 SATB2Q9UPW6 733 aa18.91■□□□□ 0.62
CLK3-227ENST00000570296 A0A1B0GVM2 712 aa18.9■□□□□ 0.62
CLK3-227ENST00000570296 A0A1W2PQH9 124 aa18.9■□□□□ 0.62
CLK3-227ENST00000570296 MAGEC1O60732 1142 aa18.9■□□□□ 0.62
CLK3-227ENST00000570296 BEST1O76090 585 aa18.9■□□□□ 0.62
CLK3-227ENST00000570296 GAP43P17677 238 aa18.9■□□□□ 0.62
CLK3-227ENST00000570296 OVGP1Q12889 678 aa18.9■□□□□ 0.62
CLK3-227ENST00000570296 ALCAMQ13740 583 aa18.9■□□□□ 0.62
CLK3-227ENST00000570296 ZSCAN23Q3MJ62 389 aa18.9■□□□□ 0.62
CLK3-227ENST00000570296 C3orf38Q5JPI3 329 aa18.9■□□□□ 0.62
CLK3-227ENST00000570296 FAM184AQ8NB25 1140 aa18.9■□□□□ 0.62
CLK3-227ENST00000570296 CDK5RAP1Q96SZ6 601 aaKnown RBP18.9■□□□□ 0.62
CLK3-227ENST00000570296 KCNK4Q9NYG8 393 aa18.9■□□□□ 0.62
CLK3-227ENST00000570296 SERGEFQ9UGK8 458 aa18.9■□□□□ 0.62
CLK3-227ENST00000570296 PAXBP1Q9Y5B6 917 aa18.9■□□□□ 0.62
CLK3-227ENST00000570296 PCDHGA8Q9Y5G5 932 aa18.9■□□□□ 0.62
CLK3-227ENST00000570296 PCDHA5Q9Y5H7 936 aa18.9■□□□□ 0.62
CLK3-227ENST00000570296 CDRT15L2A8MXV6 281 aa18.89■□□□□ 0.61
CLK3-227ENST00000570296 RNASEH1O60930 286 aaKnown RBP18.89■□□□□ 0.61
CLK3-227ENST00000570296 GCNT3O95395 438 aa18.89■□□□□ 0.61
CLK3-227ENST00000570296 DLDP09622 509 aaKnown RBP18.89■□□□□ 0.61
CLK3-227ENST00000570296 HLA-FP30511 346 aa18.89■□□□□ 0.61
CLK3-227ENST00000570296 MLLT3P42568 568 aaPredicted RBP18.89■□□□□ 0.61
CLK3-227ENST00000570296 PSEN1P49768 467 aa18.89■□□□□ 0.61
CLK3-227ENST00000570296 MAP3K7CLP57077 242 aa18.89■□□□□ 0.61
CLK3-227ENST00000570296 ISXQ2M1V0 245 aa18.89■□□□□ 0.61
CLK3-227ENST00000570296 NAPEPLDQ6IQ20 393 aa18.89■□□□□ 0.61
CLK3-227ENST00000570296 CHST9Q7L1S5 443 aa18.89■□□□□ 0.61
CLK3-227ENST00000570296 ADIPOR2Q86V24 386 aa18.89■□□□□ 0.61
CLK3-227ENST00000570296 FAM217AQ8IXS0 508 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms