RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 WFIKKN2Q8TEU8 576 aa21.07■□□□□ 0.96
CLK3-225ENST00000569063 DDX1Q92499 740 aaKnown RBP21.07■□□□□ 0.96
CLK3-225ENST00000569063 GANQ9H2C0 597 aa21.07■□□□□ 0.96
CLK3-225ENST00000569063 LIMA1Q9UHB6 759 aaKnown RBP21.07■□□□□ 0.96
CLK3-225ENST00000569063 RAD54BQ9Y620 910 aa21.07■□□□□ 0.96
CLK3-225ENST00000569063 SPAG17Q6Q759 2223 aa21.06■□□□□ 0.96
CLK3-225ENST00000569063 BCLAF3A2AJT9 711 aaKnown RBP21.06■□□□□ 0.96
CLK3-225ENST00000569063 LRRC10BA6NIK2 292 aa21.06■□□□□ 0.96
CLK3-225ENST00000569063 TBL1XO60907 577 aa21.06■□□□□ 0.96
CLK3-225ENST00000569063 APOEP02649 317 aa21.06■□□□□ 0.96
CLK3-225ENST00000569063 NDUFV2P19404 249 aa21.06■□□□□ 0.96
CLK3-225ENST00000569063 IL12RB1P42701 662 aa21.06■□□□□ 0.96
CLK3-225ENST00000569063 PITX1P78337 314 aaPredicted RBP21.06■□□□□ 0.96
CLK3-225ENST00000569063 SLC6A3Q01959 620 aa21.06■□□□□ 0.96
CLK3-225ENST00000569063 ZNF234Q14588 700 aa21.06■□□□□ 0.96
CLK3-225ENST00000569063 CCDC6Q16204 474 aa21.06■□□□□ 0.96
CLK3-225ENST00000569063 ZC3H12AQ5D1E8 599 aaKnown RBP21.06■□□□□ 0.96
CLK3-225ENST00000569063 SPDYCQ5MJ68 293 aa21.06■□□□□ 0.96
CLK3-225ENST00000569063 OR6B2Q6IFH4 312 aa21.06■□□□□ 0.96
CLK3-225ENST00000569063 ERMP1Q7Z2K6 904 aa21.06■□□□□ 0.96
CLK3-225ENST00000569063 DEFB106AQ8N104 65 aa21.06■□□□□ 0.96
CLK3-225ENST00000569063 FRMD1Q8N878 549 aa21.06■□□□□ 0.96
CLK3-225ENST00000569063 ZNF557Q8N988 423 aaPredicted RBP21.06■□□□□ 0.96
CLK3-225ENST00000569063 HJURPQ8NCD3 748 aaPredicted RBP21.06■□□□□ 0.96
CLK3-225ENST00000569063 ZNF397Q8NF99 534 aaPredicted RBP21.06■□□□□ 0.96
CLK3-225ENST00000569063 PRICKLE1Q96MT3 831 aaPredicted RBP21.06■□□□□ 0.96
CLK3-225ENST00000569063 CIPCQ9C0C6 399 aa21.06■□□□□ 0.96
CLK3-225ENST00000569063 VPS45Q9NRW7 570 aa21.06■□□□□ 0.96
CLK3-225ENST00000569063 ABCB8Q9NUT2 735 aa21.06■□□□□ 0.96
CLK3-225ENST00000569063 SLTMQ9NWH9 1034 aaKnown RBP eCLIP21.06■□□□□ 0.96
CLK3-225ENST00000569063 TMEM63CQ9P1W3 806 aa21.06■□□□□ 0.96
CLK3-225ENST00000569063 CALCOCO1Q9P1Z2 691 aa21.06■□□□□ 0.96
CLK3-225ENST00000569063 MBD1Q9UIS9 605 aaPredicted RBP21.06■□□□□ 0.96
CLK3-225ENST00000569063 GGA2Q9UJY4 613 aa21.06■□□□□ 0.96
CLK3-225ENST00000569063 CDV3Q9UKY7 258 aaKnown RBP21.06■□□□□ 0.96
CLK3-225ENST00000569063 DAAM1Q9Y4D1 1078 aa21.06■□□□□ 0.96
CLK3-225ENST00000569063 ZNF217O75362 1048 aa21.05■□□□□ 0.96
CLK3-225ENST00000569063 KLK7P49862 253 aa21.05■□□□□ 0.96
CLK3-225ENST00000569063 COPB1P53618 953 aaKnown RBP21.05■□□□□ 0.96
CLK3-225ENST00000569063 CDK17Q00537 523 aa21.05■□□□□ 0.96
CLK3-225ENST00000569063 CREB5Q02930 508 aa21.05■□□□□ 0.96
CLK3-225ENST00000569063 STARD3Q14849 445 aa21.05■□□□□ 0.96
CLK3-225ENST00000569063 NCAPHQ15003 741 aa21.05■□□□□ 0.96
CLK3-225ENST00000569063 MS4A13Q5J8X5 152 aa21.05■□□□□ 0.96
CLK3-225ENST00000569063 LPCAT2Q7L5N7 544 aa21.05■□□□□ 0.96
CLK3-225ENST00000569063 SLC26A9Q7LBE3 791 aa21.05■□□□□ 0.96
CLK3-225ENST00000569063 NOP9Q86U38 636 aaKnown RBP21.05■□□□□ 0.96
CLK3-225ENST00000569063 ADIPOR2Q86V24 386 aa21.05■□□□□ 0.96
CLK3-225ENST00000569063 AHI1Q8N157 1196 aa21.05■□□□□ 0.96
CLK3-225ENST00000569063 ANKRD20A12PQ8NF67 263 aa21.05■□□□□ 0.96
CLK3-225ENST00000569063 FIBINQ8TAL6 211 aa21.05■□□□□ 0.96
CLK3-225ENST00000569063 NETO1Q8TDF5 533 aa21.05■□□□□ 0.96
CLK3-225ENST00000569063 SORCS1Q8WY21 1168 aa21.05■□□□□ 0.96
CLK3-225ENST00000569063 BTN2A3PQ96KV6 586 aa21.05■□□□□ 0.96
CLK3-225ENST00000569063 MRGPRX1Q96LB2 322 aa21.05■□□□□ 0.96
CLK3-225ENST00000569063 NUCKS1Q9H1E3 243 aaKnown RBP21.05■□□□□ 0.96
CLK3-225ENST00000569063 PDCL3Q9H2J4 239 aa21.05■□□□□ 0.96
CLK3-225ENST00000569063 SYNCQ9H7C4 482 aa21.05■□□□□ 0.96
CLK3-225ENST00000569063 XPO7Q9UIA9 1087 aaKnown RBP21.05■□□□□ 0.96
CLK3-225ENST00000569063 SIK3Q9Y2K2 1263 aa21.05■□□□□ 0.96
CLK3-225ENST00000569063 PLXND1Q9Y4D7 1925 aa21.04■□□□□ 0.96
CLK3-225ENST00000569063 MAP3K13O43283 966 aa21.04■□□□□ 0.96
CLK3-225ENST00000569063 LSM8O95777 96 aaKnown RBP21.04■□□□□ 0.96
CLK3-225ENST00000569063 MOCS2O96007 188 aaPredicted RBP21.04■□□□□ 0.96
CLK3-225ENST00000569063 SLC2A3P11169 496 aa21.04■□□□□ 0.96
CLK3-225ENST00000569063 PABPC1P11940 636 aaKnown RBP21.04■□□□□ 0.96
CLK3-225ENST00000569063 ZNF18P17022 549 aa21.04■□□□□ 0.96
CLK3-225ENST00000569063 GABRB2P47870 512 aa21.04■□□□□ 0.96
CLK3-225ENST00000569063 POLR2FP61218 127 aaKnown RBP21.04■□□□□ 0.96
CLK3-225ENST00000569063 ARID5AQ03989 594 aa21.04■□□□□ 0.96
CLK3-225ENST00000569063 TYRO3Q06418 890 aa21.04■□□□□ 0.96
CLK3-225ENST00000569063 SF3A2Q15428 464 aaKnown RBP21.04■□□□□ 0.96
CLK3-225ENST00000569063 FUT11Q495W5 492 aa21.04■□□□□ 0.96
CLK3-225ENST00000569063 CHST9Q7L1S5 443 aa21.04■□□□□ 0.96
CLK3-225ENST00000569063 WFDC5Q8TCV5 224 aa21.04■□□□□ 0.96
CLK3-225ENST00000569063 EPS8L1Q8TE68 723 aa21.04■□□□□ 0.96
CLK3-225ENST00000569063 MYEOVQ96EZ4 313 aa21.04■□□□□ 0.96
CLK3-225ENST00000569063 LMLNQ96KR4 655 aa21.04■□□□□ 0.96
CLK3-225ENST00000569063 HSD3B7Q9H2F3 369 aa21.04■□□□□ 0.96
CLK3-225ENST00000569063 FAM204AQ9H8W3 233 aa21.04■□□□□ 0.96
CLK3-225ENST00000569063 FAM207AQ9NSI2 230 aaPredicted RBP21.04■□□□□ 0.96
CLK3-225ENST00000569063 RALGAPA1Q6GYQ0 2036 aa21.04■□□□□ 0.96
CLK3-225ENST00000569063 LOC105378220A0A1B0GUY1 285 aaPredicted RBP21.03■□□□□ 0.96
CLK3-225ENST00000569063 TYW5A2RUC4 315 aaKnown RBP21.03■□□□□ 0.96
CLK3-225ENST00000569063 LGALS16A8MUM7 142 aa21.03■□□□□ 0.96
CLK3-225ENST00000569063 KCNU1A8MYU2 1149 aa21.03■□□□□ 0.96
CLK3-225ENST00000569063 DAB1O75553 588 aa21.03■□□□□ 0.96
CLK3-225ENST00000569063 GRAP2O75791 330 aa21.03■□□□□ 0.96
CLK3-225ENST00000569063 CAVIN2O95810 425 aa21.03■□□□□ 0.96
CLK3-225ENST00000569063 CCR1P32246 355 aa21.03■□□□□ 0.96
CLK3-225ENST00000569063 NOS2P35228 1153 aa21.03■□□□□ 0.96
CLK3-225ENST00000569063 SCNN1AP37088 669 aa21.03■□□□□ 0.96
CLK3-225ENST00000569063 ATXN1P54253 815 aaKnown RBP21.03■□□□□ 0.96
CLK3-225ENST00000569063 JAM2P57087 298 aa21.03■□□□□ 0.96
CLK3-225ENST00000569063 RPS24P62847 133 aaKnown RBP21.03■□□□□ 0.96
CLK3-225ENST00000569063 TAF3Q5VWG9 929 aa21.03■□□□□ 0.96
CLK3-225ENST00000569063 SLC36A4Q6YBV0 504 aa21.03■□□□□ 0.96
CLK3-225ENST00000569063 METTL3Q86U44 580 aaKnown RBP21.03■□□□□ 0.96
CLK3-225ENST00000569063 MFN1Q8IWA4 741 aa21.03■□□□□ 0.96
CLK3-225ENST00000569063 ATP6V0D2Q8N8Y2 350 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms