RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 VCLP18206 1134 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 EPHA3P29320 983 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 PMLP29590 882 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 PTPN7P35236 360 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 CCDC14Q49A88 953 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 HSP90AA5PQ58FG0 334 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 FSCBQ5H9T9 825 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 LAYNQ6UX15 382 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 ARHGAP22Q7Z5H3 698 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 CATSPER2Q96P56 530 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 SIX4Q9UIU6 781 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 AHDC1Q5TGY3 1603 aaPredicted RBP14.9□□□□□ -0.02
VPS35-210ENST00000568784 TRDMT1O14717 391 aaKnown RBP14.89□□□□□ -0.03
VPS35-210ENST00000568784 PTPRAP18433 802 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 PSMB4P28070 264 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 RPS6KA3P51812 740 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 WASHC5Q12768 1159 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 PDE1CQ14123 709 aaPredicted RBP14.89□□□□□ -0.03
VPS35-210ENST00000568784 FRMD7Q6ZUT3 714 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 STRA8Q7Z7C7 330 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 RNF135Q8IUD6 432 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 FNIP1Q8TF40 1166 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 NR1H4Q96RI1 486 aaPredicted RBP14.89□□□□□ -0.03
VPS35-210ENST00000568784 PRPF18Q99633 342 aaKnown RBP14.89□□□□□ -0.03
VPS35-210ENST00000568784 NUF2Q9BZD4 464 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 TASP1Q9H6P5 420 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 STK32BQ9NY57 414 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 TLK1Q9UKI8 766 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 ADAMTS6Q9UKP5 1117 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 SSX2IPQ9Y2D8 614 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 PCNTO95613 3336 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 C2CD4BA6NLJ0 364 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 AMHP03971 560 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 CRHR1P34998 444 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 PDK2Q15119 407 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 DCAF6Q58WW2 860 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 PACS1Q6VY07 963 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 FAM156AQ8NDB6 213 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 USP33Q8TEY7 942 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 TFB1MQ8WVM0 346 aaKnown RBP14.89□□□□□ -0.03
VPS35-210ENST00000568784 TMPRSS4Q9NRS4 437 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 POMPQ9Y244 141 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 A0A088AWK7 358 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 ACKR2O00590 384 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 MAFO75444 373 aaPredicted RBP14.89□□□□□ -0.03
VPS35-210ENST00000568784 FARP2O94887 1054 aaPredicted RBP14.89□□□□□ -0.03
VPS35-210ENST00000568784 RTN3O95197 1032 aaPredicted RBP14.89□□□□□ -0.03
VPS35-210ENST00000568784 ITGBL1O95965 494 aaPredicted RBP14.89□□□□□ -0.03
VPS35-210ENST00000568784 ITGA2BP08514 1039 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 GSTA3Q16772 222 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 TRNP1Q6NT89 227 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 MTHFD1LQ6UB35 978 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 SPATA6LQ8N4H0 392 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 PQLC3Q8N755 202 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.89□□□□□ -0.03
VPS35-210ENST00000568784 AGBL3Q8NEM8 1001 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 GMLQ99445 158 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 LHX5Q9H2C1 402 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 DPP3Q9NY33 737 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 SIRPGQ9P1W8 387 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 CNTN3Q9P232 1028 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 HES2Q9Y543 173 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 ADGRA2Q96PE1 1338 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 XPO1O14980 1071 aaKnown RBP14.89□□□□□ -0.03
VPS35-210ENST00000568784 PAPSS1O43252 624 aaPredicted RBP14.89□□□□□ -0.03
VPS35-210ENST00000568784 CILPO75339 1184 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 GMPSP49915 693 aaPredicted RBP14.89□□□□□ -0.03
VPS35-210ENST00000568784 CDK7P50613 346 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 FOLH1Q04609 750 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 HSF5Q4G112 596 aaPredicted RBP14.89□□□□□ -0.03
VPS35-210ENST00000568784 MYLK4Q86YV6 388 aaPredicted RBP14.89□□□□□ -0.03
VPS35-210ENST00000568784 CCDC106Q9BWC9 280 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 SPATA16Q9BXB7 569 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 Q9H521 79 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 ASB3Q9Y575 518 aa14.89□□□□□ -0.03
VPS35-210ENST00000568784 RNF103O00237 685 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 NUMBP49757 651 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 TEDDM1Q5T9Z0 273 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 MAP3K21Q5TCX8 1036 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 ZNF781Q8N8C0 355 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 OR52K1Q8NGK4 314 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 HTR3CQ8WXA8 447 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 KCNK16Q96T55 309 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 PCYT2Q99447 389 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 EPAS1Q99814 870 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 SYBUQ9NX95 663 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 GGA3Q9NZ52 723 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 BARX2Q9UMQ3 279 aaPredicted RBP14.88□□□□□ -0.03
VPS35-210ENST00000568784 CAPN14A8MX76 684 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 PLIN3O60664 434 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 CLPTM1O96005 669 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 FGFR3P22607 806 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 IDH3AP50213 366 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 NRF1Q16656 503 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 APLFQ8IW19 511 aaPredicted RBP14.88□□□□□ -0.03
VPS35-210ENST00000568784 FAM167AQ96KS9 214 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 SIGLEC10Q96LC7 697 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 SEMA6AQ9H2E6 1030 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 COG4Q9H9E3 785 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 GTSE1Q9NYZ3 720 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms