RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 TNRC6BQ9UPQ9 1833 aaKnown RBP17.58■□□□□ 0.41
CLN3-211ENST00000564091 A0A1B0GVT2 93 aa17.58■□□□□ 0.4
CLN3-211ENST00000564091 O00370 1275 aa17.58■□□□□ 0.4
CLN3-211ENST00000564091 PIK3R2O00459 728 aa17.58■□□□□ 0.4
CLN3-211ENST00000564091 GABBR2O75899 941 aa17.58■□□□□ 0.4
CLN3-211ENST00000564091 VDRP11473 427 aa17.58■□□□□ 0.4
CLN3-211ENST00000564091 ACSL1P33121 698 aa17.58■□□□□ 0.4
CLN3-211ENST00000564091 CSNK1EP49674 416 aaKnown RBP17.58■□□□□ 0.4
CLN3-211ENST00000564091 RGS7P49802 495 aa17.58■□□□□ 0.4
CLN3-211ENST00000564091 RING1Q06587 406 aa17.58■□□□□ 0.4
CLN3-211ENST00000564091 SCAPQ12770 1279 aa17.58■□□□□ 0.4
CLN3-211ENST00000564091 PTPRNQ16849 979 aa17.58■□□□□ 0.4
CLN3-211ENST00000564091 HLA-BQ31612 363 aa17.58■□□□□ 0.4
CLN3-211ENST00000564091 ADGRF1Q5T601 910 aa17.58■□□□□ 0.4
CLN3-211ENST00000564091 SLCO6A1Q86UG4 719 aa17.58■□□□□ 0.4
CLN3-211ENST00000564091 ZC3H3Q8IXZ2 948 aaKnown RBP17.58■□□□□ 0.4
CLN3-211ENST00000564091 UBR7Q8N806 425 aa17.58■□□□□ 0.4
CLN3-211ENST00000564091 ERCC4Q92889 916 aaPredicted RBP17.58■□□□□ 0.4
CLN3-211ENST00000564091 TSG101Q99816 390 aa17.58■□□□□ 0.4
CLN3-211ENST00000564091 TMEM245Q9H330 911 aa17.58■□□□□ 0.4
CLN3-211ENST00000564091 TM7SF3Q9NS93 570 aa17.58■□□□□ 0.4
CLN3-211ENST00000564091 PLXND1Q9Y4D7 1925 aa17.57■□□□□ 0.4
CLN3-211ENST00000564091 GOLGA6L7A0A1B0GV03 622 aa17.57■□□□□ 0.4
CLN3-211ENST00000564091 TRIM49BA6NDI0 452 aa17.57■□□□□ 0.4
CLN3-211ENST00000564091 SLC16A3O15427 465 aaKnown RBP17.57■□□□□ 0.4
CLN3-211ENST00000564091 CAPNS1P04632 268 aa17.57■□□□□ 0.4
CLN3-211ENST00000564091 PABPC1P11940 636 aaKnown RBP17.57■□□□□ 0.4
CLN3-211ENST00000564091 MATKP42679 507 aa17.57■□□□□ 0.4
CLN3-211ENST00000564091 DAOAP59103 153 aa17.57■□□□□ 0.4
CLN3-211ENST00000564091 FKBP3Q00688 224 aaKnown RBP17.57■□□□□ 0.4
CLN3-211ENST00000564091 PKDCCQ504Y2 493 aa17.57■□□□□ 0.4
CLN3-211ENST00000564091 ZNF658Q5TYW1 1059 aaPredicted RBP17.57■□□□□ 0.4
CLN3-211ENST00000564091 MBLAC2Q68D91 279 aa17.57■□□□□ 0.4
CLN3-211ENST00000564091 RFWD3Q6PCD5 774 aa17.57■□□□□ 0.4
CLN3-211ENST00000564091 IL27RAQ6UWB1 636 aa17.57■□□□□ 0.4
CLN3-211ENST00000564091 WFDC5Q8TCV5 224 aa17.57■□□□□ 0.4
CLN3-211ENST00000564091 WFIKKN2Q8TEU8 576 aa17.57■□□□□ 0.4
CLN3-211ENST00000564091 KCTD13Q8WZ19 329 aa17.57■□□□□ 0.4
CLN3-211ENST00000564091 TFAP2BQ92481 460 aa17.57■□□□□ 0.4
CLN3-211ENST00000564091 PRSS16Q9NQE7 514 aa17.57■□□□□ 0.4
CLN3-211ENST00000564091 CNGB3Q9NQW8 809 aa17.57■□□□□ 0.4
CLN3-211ENST00000564091 ABCC13Q9NSE7 274 aa17.57■□□□□ 0.4
CLN3-211ENST00000564091 RMND1Q9NWS8 449 aa17.57■□□□□ 0.4
CLN3-211ENST00000564091 ARMCX3Q9UH62 379 aaPredicted RBP17.57■□□□□ 0.4
CLN3-211ENST00000564091 GGA2Q9UJY4 613 aa17.57■□□□□ 0.4
CLN3-211ENST00000564091 LHX6Q9UPM6 363 aa17.57■□□□□ 0.4
CLN3-211ENST00000564091 ATP6V1DQ9Y5K8 247 aa17.57■□□□□ 0.4
CLN3-211ENST00000564091 CER1O95813 267 aa17.56■□□□□ 0.4
CLN3-211ENST00000564091 CALCAP01258 141 aa17.56■□□□□ 0.4
CLN3-211ENST00000564091 SETSIPP0DME0 302 aa17.56■□□□□ 0.4
CLN3-211ENST00000564091 CD70P32970 193 aa17.56■□□□□ 0.4
CLN3-211ENST00000564091 ZNF445P59923 1031 aa17.56■□□□□ 0.4
CLN3-211ENST00000564091 YWHAEP62258 255 aaKnown RBP17.56■□□□□ 0.4
CLN3-211ENST00000564091 RPS14P62263 151 aaKnown RBP17.56■□□□□ 0.4
CLN3-211ENST00000564091 KIF19Q2TAC6 998 aa17.56■□□□□ 0.4
CLN3-211ENST00000564091 PMF1Q6P1K2 205 aa17.56■□□□□ 0.4
CLN3-211ENST00000564091 TMEM270Q6UE05 265 aa17.56■□□□□ 0.4
CLN3-211ENST00000564091 LCLAT1Q6UWP7 414 aa17.56■□□□□ 0.4
CLN3-211ENST00000564091 KIAA0907Q7Z7F0 614 aaPredicted RBP17.56■□□□□ 0.4
CLN3-211ENST00000564091 PROSER1Q86XN7 944 aa17.56■□□□□ 0.4
CLN3-211ENST00000564091 AHI1Q8N157 1196 aa17.56■□□□□ 0.4
CLN3-211ENST00000564091 DDX51Q8N8A6 666 aaKnown RBP eCLIP17.56■□□□□ 0.4
CLN3-211ENST00000564091 SLC35C1Q96A29 364 aa17.56■□□□□ 0.4
CLN3-211ENST00000564091 CCDC34Q96HJ3 373 aa17.56■□□□□ 0.4
CLN3-211ENST00000564091 ZSWIM1Q9BR11 485 aa17.56■□□□□ 0.4
CLN3-211ENST00000564091 MTG2Q9H4K7 406 aa17.56■□□□□ 0.4
CLN3-211ENST00000564091 KIAA1257Q9ULG3 409 aa17.56■□□□□ 0.4
CLN3-211ENST00000564091 APOBEC2Q9Y235 224 aaKnown RBP17.56■□□□□ 0.4
CLN3-211ENST00000564091 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.56■□□□□ 0.4
CLN3-211ENST00000564091 RNF225M0QZC1 329 aaPredicted RBP17.55■□□□□ 0.4
CLN3-211ENST00000564091 KCNK3O14649 394 aa17.55■□□□□ 0.4
CLN3-211ENST00000564091 TBL1XO60907 577 aa17.55■□□□□ 0.4
CLN3-211ENST00000564091 LATS1O95835 1130 aa17.55■□□□□ 0.4
CLN3-211ENST00000564091 DLDP09622 509 aaKnown RBP17.55■□□□□ 0.4
CLN3-211ENST00000564091 AFF3P51826 1226 aaKnown RBP17.55■□□□□ 0.4
CLN3-211ENST00000564091 LRSAM1Q6UWE0 723 aa17.55■□□□□ 0.4
CLN3-211ENST00000564091 LAYNQ6UX15 382 aa17.55■□□□□ 0.4
CLN3-211ENST00000564091 CCNI2Q6ZMN8 369 aaPredicted RBP17.55■□□□□ 0.4
CLN3-211ENST00000564091 GLRX5Q86SX6 157 aa17.55■□□□□ 0.4
CLN3-211ENST00000564091 FMR1NBQ8N0W7 255 aaPredicted RBP17.55■□□□□ 0.4
CLN3-211ENST00000564091 RHBDD1Q8TEB9 315 aa17.55■□□□□ 0.4
CLN3-211ENST00000564091 CLEC4CQ8WTT0 213 aa17.55■□□□□ 0.4
CLN3-211ENST00000564091 SLC35F5Q8WV83 523 aa17.55■□□□□ 0.4
CLN3-211ENST00000564091 KAT5Q92993 513 aa17.55■□□□□ 0.4
CLN3-211ENST00000564091 BTBD1Q9H0C5 482 aa17.55■□□□□ 0.4
CLN3-211ENST00000564091 PCED1AQ9H1Q7 454 aa17.55■□□□□ 0.4
CLN3-211ENST00000564091 STIM2Q9P246 746 aa17.55■□□□□ 0.4
CLN3-211ENST00000564091 PCDHB4Q9Y5E5 795 aa17.55■□□□□ 0.4
CLN3-211ENST00000564091 SNX11Q9Y5W9 270 aa17.55■□□□□ 0.4
CLN3-211ENST00000564091 KNL1Q8NG31 2342 aa17.55■□□□□ 0.4
CLN3-211ENST00000564091 ANKRD11Q6UB99 2663 aaPredicted RBP17.55■□□□□ 0.4
CLN3-211ENST00000564091 FSBPO95073 299 aa17.54■□□□□ 0.4
CLN3-211ENST00000564091 SEMA4FO95754 770 aa17.54■□□□□ 0.4
CLN3-211ENST00000564091 ATP5BP06576 529 aaKnown RBP17.54■□□□□ 0.4
CLN3-211ENST00000564091 ZNF883P0CG24 379 aa17.54■□□□□ 0.4
CLN3-211ENST00000564091 TBXAS1P24557 533 aaPredicted RBP17.54■□□□□ 0.4
CLN3-211ENST00000564091 BRD2P25440 801 aaKnown RBP17.54■□□□□ 0.4
CLN3-211ENST00000564091 SLC6A4P31645 630 aa17.54■□□□□ 0.4
CLN3-211ENST00000564091 COBLL1Q53SF7 1204 aa17.54■□□□□ 0.4
CLN3-211ENST00000564091 FAM133BQ5BKY9 247 aaKnown RBP17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms