RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 IL12RB1P42701 662 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 RFX3P48380 749 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 TSNQ15631 228 aaKnown RBP13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 STYK1Q6J9G0 422 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 LRRC74BQ6ZQY2 392 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 EMC1Q8N766 993 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 MTMR8Q96EF0 704 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 FUCA2Q9BTY2 467 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 OSBPL6Q9BZF3 934 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 ARHGAP28Q9P2N2 729 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 NFKBIL1Q9UBC1 381 aaPredicted RBP13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 TRPC4Q9UBN4 977 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 HACD1B0YJ81 288 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 SNPHO15079 494 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 PAICSP22234 425 aaKnown RBP13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 PSMC6P62333 389 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 COX10Q12887 443 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 AMHR2Q16671 573 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 ATAD3BQ5T9A4 648 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 CDC73Q6P1J9 531 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 STK32CQ86UX6 486 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 FAM228AQ86W67 206 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 OR6Y1Q8NGX8 325 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 PIK3R5Q8WYR1 880 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 GJD4Q96KN9 370 aaPredicted RBP13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 HDHD2Q9H0R4 259 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 MYOZ2Q9NPC6 264 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 ATAD3AQ9NVI7 634 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 VPS51Q9UID3 782 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 HACL1Q9UJ83 578 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 VAV3Q9UKW4 847 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 BARX2Q9UMQ3 279 aaPredicted RBP13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 ZMYM2Q9UBW7 1377 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 ETS1P14921 441 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 CAP2P40123 477 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 CLCN3P51790 818 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 OTUD3Q5T2D3 398 aaPredicted RBP13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 IKBIPQ70UQ0 350 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 CLVS1Q8IUQ0 354 aaPredicted RBP13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 HERC6Q8IVU3 1022 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 ZNF606Q8WXB4 792 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 TMEM39BQ9GZU3 492 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 EPB41L4BQ9H329 900 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 RNPEPQ9H4A4 650 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 MROH8Q9H579 483 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 CAPN10Q9HC96 672 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 FAM47E-STBD1D6RA91 191 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 KATNA1O75449 491 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 ARP10275 920 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 ZNF844Q08AG5 666 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 VPS72Q15906 364 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 FBXO47Q5MNV8 452 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 MACC1Q6ZN28 852 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 PTAR1Q7Z6K3 402 aaPredicted RBP13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 KCNMB4Q86W47 210 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 ZDHHC13Q8IUH4 622 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 HTR3CQ8WXA8 447 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 PHACTR1Q9C0D0 580 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 HMG20AQ9NP66 347 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 SRRM3A6NNA2 597 aaPredicted RBP13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 TBC1D12O60347 775 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 ABCB1P08183 1280 aaPredicted RBP13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 JAK1P23458 1154 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 IFNGR2P38484 337 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 CDK16Q00536 496 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 EFEMP1Q12805 493 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 ZNF280DQ6N043 979 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 MTSS1LQ765P7 747 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 ANKRD49Q8WVL7 239 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 FIG4Q92562 907 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 A1CFQ9NQ94 594 aaKnown RBP13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 KCNK4Q9NYG8 393 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 UBAP1Q9NZ09 502 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 PECAM1P16284 738 aaPredicted RBP13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 MYL12AP19105 171 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 YWHAQP27348 245 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 MMP14P50281 582 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 TKTL1P51854 596 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 C21orf59P57076 290 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 FRG1Q14331 258 aaKnown RBP13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 CTXN3Q4LDR2 81 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 TTC27Q6P3X3 843 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 KRT77Q7Z794 578 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 CROCCP3Q8IVE0 287 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 ENKURQ8TC29 256 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 ZNF75CPQ92670 426 aaPredicted RBP13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 SH3BP4Q9P0V3 963 aa13.5□□□□□ -0.25
CSPG4P11-201ENST00000560634 IFRD1O00458 451 aaPredicted RBP13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 PCNAP12004 261 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 FEN1P39748 380 aaKnown RBP13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 ZNF157P51786 506 aaPredicted RBP13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 STX4Q12846 297 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 DGKKQ5KSL6 1271 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 FAM117BQ6P1L5 589 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 VN1R5Q7Z5H4 357 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 PHACTR4Q8IZ21 702 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 FNDC5Q8NAU1 212 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 METTL6Q8TCB7 284 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 CENPIQ92674 756 aaPredicted RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms