RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 ACTR5Q9H9F9 607 aaPredicted RBP10.95□□□□□ -0.66
CUX1-217ENST00000558836 WDR6Q9NNW5 1121 aaKnown RBP10.95□□□□□ -0.66
CUX1-217ENST00000558836 PRKAG3Q9UGI9 489 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 IQANK1A0A1B0GTG1 560 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 E2F8A0AVK6 867 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 GPR182O15218 404 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 SRGAP2BP0DMP2 458 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 PRKAR2AP13861 404 aaKnown RBP10.95□□□□□ -0.66
CUX1-217ENST00000558836 ZFXP17010 805 aaPredicted RBP10.95□□□□□ -0.66
CUX1-217ENST00000558836 LHX1P48742 406 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 NUMBP49757 651 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 ARCQ7LC44 396 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 PID1Q7Z2X4 250 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 ZNF567Q8N184 647 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 OR10T2Q8NGX3 314 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 KCTD13Q8WZ19 329 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 CELF6Q96J87 481 aaKnown RBP10.95□□□□□ -0.66
CUX1-217ENST00000558836 APOL2Q9BQE5 337 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 SIK2Q9H0K1 926 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 ECT2Q9H8V3 914 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 UBP1Q9NZI7 540 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 SLC12A4Q9UP95 1085 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 SHROOM3Q8TF72 1996 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 CCDC78A2IDD5 438 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 C2orf71A6NGG8 1288 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 SMAPO00193 183 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 SEPT4O43236 478 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 ADAMTS4O75173 837 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 APOEP02649 317 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 MGAT1P26572 445 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 FCGRTP55899 365 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 LPIN1Q14693 890 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 PLEKHG4Q58EX7 1191 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 SLC26A11Q86WA9 606 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 ZNF276Q8N554 614 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 RNF34Q969K3 372 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 PGBD4Q96DM1 585 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 SLC2A13Q96QE2 648 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 EBNA1BP2Q99848 306 aaKnown RBP10.95□□□□□ -0.66
CUX1-217ENST00000558836 TKTL2Q9H0I9 626 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 KLC4Q9NSK0 619 aa10.95□□□□□ -0.66
CUX1-217ENST00000558836 A0A0A0MRY4 1105 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 H3BRJ5 948 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 B4GALT3O60512 393 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 EDF1O60869 148 aaKnown RBP10.94□□□□□ -0.66
CUX1-217ENST00000558836 LTFP02788 710 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 SCNN1AP37088 669 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 MGAT3Q09327 533 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 WASHC5Q12768 1159 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 XRCC4Q13426 336 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 SDHAF4Q5VUM1 108 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 HACE1Q8IYU2 909 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 ERP27Q96DN0 273 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 SPATA13Q96N96 652 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 NCAPGQ9BPX3 1015 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 PHACTR1Q9C0D0 580 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 DNAI2Q9GZS0 605 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 ZNF395Q9H8N7 513 aaPredicted RBP10.94□□□□□ -0.66
CUX1-217ENST00000558836 CYLDQ9NQC7 956 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 RNF186Q9NXI6 227 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 CCDC195A0A1B0GUA6 201 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 HMX2A2RU54 273 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 HHLA1C9JL84 531 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 CA12O43570 354 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 RASSF9O75901 435 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 ZWINTO95229 277 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 BGNP21810 368 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 TPI1P60174 286 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 IRF5Q13568 498 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 CYB5D1Q6P9G0 228 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 SH2D5Q6ZV89 423 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 COLEC11Q9BWP8 271 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 WDCPQ9H6R7 721 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 GIT1Q9Y2X7 761 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 NUMBLQ9Y6R0 609 aa10.94□□□□□ -0.66
CUX1-217ENST00000558836 EPHB2P29323 1055 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 NCALDP61601 193 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 DPYSQ14117 519 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 CD300LGQ6UXG3 332 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 BHLHA9Q7RTU4 235 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 ZNF280BQ86YH2 543 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 RFWD2Q8NHY2 731 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 ATXN7L3BQ96GX2 97 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 OXNAD1Q96HP4 312 aaPredicted RBP10.93□□□□□ -0.66
CUX1-217ENST00000558836 SRPK1Q96SB4 655 aaKnown RBP10.93□□□□□ -0.66
CUX1-217ENST00000558836 MYLK2Q9H1R3 596 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 MANSC1Q9H8J5 431 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 CD248Q9HCU0 757 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 PCMTD2Q9NV79 361 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 KLHL8Q9P2G9 620 aaPredicted RBP10.93□□□□□ -0.66
CUX1-217ENST00000558836 OR12D3Q9UGF7 316 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 FETUBQ9UGM5 382 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 SFMBT1Q9UHJ3 866 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 CHKBQ9Y259 395 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 STK38LQ9Y2H1 464 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 A0A0G2JND7 137 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 COPEO14579 308 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 MSI1O43347 362 aaKnown RBP10.93□□□□□ -0.66
CUX1-217ENST00000558836 MAGEA3P43357 314 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 INHBEP58166 350 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms