RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 GBE1Q04446 702 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 STXBP5Q5T5C0 1151 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 FAXCQ5TGI0 409 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 SPRYD7Q5W111 196 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 FAM91A1Q658Y4 838 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 TAF2Q6P1X5 1199 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 UNC5AQ6ZN44 842 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 TIFABQ6ZNK6 161 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 SH2D5Q6ZV89 423 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 MARK2Q7KZI7 788 aaKnown RBP7.49□□□□□ -1.21
VPS13C-206ENST00000558338 FAM228AQ86W67 206 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 DEFB106AQ8N104 65 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 SIX6OS1Q8N1H7 587 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 TMEM86AQ8N2M4 240 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 ZNF276Q8N554 614 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 C2orf69Q8N8R5 385 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 ANKLE1Q8NAG6 615 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 DNAJB3Q8WWF6 145 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 ATP2A3Q93084 1043 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 TTC17Q96AE7 1141 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 FAM149B1Q96BN6 582 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 STAMBPL1Q96FJ0 436 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 SERAC1Q96JX3 654 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 C7orf26Q96N11 449 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 SRPK1Q96SB4 655 aaKnown RBP7.49□□□□□ -1.21
VPS13C-206ENST00000558338 SIKE1Q9BRV8 207 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 BRD8Q9H0E9 1235 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 YY1AP1Q9H869 796 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 HMX1Q9NP08 348 aaPredicted RBP7.49□□□□□ -1.21
VPS13C-206ENST00000558338 MTMR10Q9NXD2 777 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 DTLQ9NZJ0 730 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 SLC17A7Q9P2U7 560 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 STK38LQ9Y2H1 464 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 PLLPQ9Y342 182 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 HES2Q9Y543 173 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 IPPQ9Y573 584 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 MAD1L1Q9Y6D9 718 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 WDR91A4D1P6 747 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 SDR42E2A6NKP2 422 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 NCAM2O15394 837 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 MTSS1O43312 755 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 KPNA6O60684 536 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 AVILO75366 819 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 METTL18O95568 372 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 LMNAP02545 664 aaKnown RBP7.49□□□□□ -1.21
VPS13C-206ENST00000558338 FAM200BP0CF97 657 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 FGFR1P11362 822 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 PGAM1P18669 254 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 AKAP5P24588 427 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 TARSP26639 723 aaKnown RBP7.49□□□□□ -1.21
VPS13C-206ENST00000558338 PTPN4P29074 926 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 CRHR1P34998 444 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 GARSP41250 739 aaKnown RBP7.49□□□□□ -1.21
VPS13C-206ENST00000558338 LHX1P48742 406 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 NRLP54845 237 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 LILRA4P59901 499 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 ZBTB16Q05516 673 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 ADIGQ0VDE8 80 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 PAFAH1B3Q15102 231 aaKnown RBP7.49□□□□□ -1.21
VPS13C-206ENST00000558338 TUSC1Q2TAM9 212 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 ANKRD20A2Q5SQ80 823 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 MORN1Q5T089 497 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 UBXN11Q5T124 520 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 ANKRD20A1Q5TYW2 823 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 ANKRD20A3Q5VUR7 823 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 OLFML2BQ68BL8 750 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 LRRC8BQ6P9F7 803 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 KYAT3Q6YP21 454 aaKnown RBP7.49□□□□□ -1.21
VPS13C-206ENST00000558338 ZNF534Q76KX8 674 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 BNIPLQ7Z465 357 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 PRPF39Q86UA1 669 aaKnown RBP7.49□□□□□ -1.21
VPS13C-206ENST00000558338 PIGZQ86VD9 579 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 KIF2BQ8N4N8 673 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 CCDC185Q8N715 623 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 GIMAP7Q8NHV1 300 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 CLEC4CQ8WTT0 213 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 RNF139Q8WU17 664 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 WNT8BQ93098 351 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 NT5C3BQ969T7 300 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 NTAN1Q96AB6 310 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 SIGLEC10Q96LC7 697 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 SLC2A13Q96QE2 648 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 NPY6RQ99463 290 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 KLF6Q99612 283 aaPredicted RBP7.49□□□□□ -1.21
VPS13C-206ENST00000558338 MED10Q9BTT4 135 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 FAM96AQ9H5X1 160 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 ARHGEF4Q9NR80 690 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 KCNK4Q9NYG8 393 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 IGSF9Q9P2J2 1179 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 RPS6KL1Q9Y6S9 549 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 C9IYK1 514 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 E7ENQ6 273 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 AP3B1O00203 1094 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 EEF2KO00418 725 aaKnown RBP7.48□□□□□ -1.21
VPS13C-206ENST00000558338 CYB561D2O14569 222 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 SPTLC1O15269 473 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 ADCY6O43306 1168 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 ATP9BO43861 1147 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 MFSD11O43934 449 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 SH3BP5O60239 455 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms