RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 LAMC2Q13753 1193 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 STILQ15468 1287 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 SYPL2Q5VXT5 272 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 ATG16L1Q676U5 607 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 MAVSQ7Z434 540 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 RNF169Q8NCN4 708 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 PPP1R14CQ8TAE6 165 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 P2RY11Q96G91 374 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 PANX3Q96QZ0 392 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 XAB2Q9HCS7 855 aaKnown RBP13.28□□□□□ -0.28
LDLR-207ENST00000558013 SYBUQ9NX95 663 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 USP3Q9Y6I4 520 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 CCDC78A2IDD5 438 aa13.27□□□□□ -0.28
LDLR-207ENST00000558013 A6NHS1 94 aa13.27□□□□□ -0.28
LDLR-207ENST00000558013 FAM72CH0Y354 149 aa13.27□□□□□ -0.28
LDLR-207ENST00000558013 PRKCGP05129 697 aa13.27□□□□□ -0.28
LDLR-207ENST00000558013 FAM72AQ5TYM5 149 aa13.27□□□□□ -0.28
LDLR-207ENST00000558013 C9orf57Q5W0N0 161 aa13.27□□□□□ -0.28
LDLR-207ENST00000558013 FAM72DQ6L9T8 149 aa13.27□□□□□ -0.28
LDLR-207ENST00000558013 LRRC74BQ6ZQY2 392 aa13.27□□□□□ -0.28
LDLR-207ENST00000558013 EP400NLQ6ZTU2 488 aa13.27□□□□□ -0.28
LDLR-207ENST00000558013 CATSPER4Q7RTX7 472 aa13.27□□□□□ -0.28
LDLR-207ENST00000558013 FAM72BQ86X60 149 aa13.27□□□□□ -0.28
LDLR-207ENST00000558013 C10orf107Q8IVU9 208 aa13.27□□□□□ -0.28
LDLR-207ENST00000558013 SPNS2Q8IVW8 549 aa13.27□□□□□ -0.28
LDLR-207ENST00000558013 AGR3Q8TD06 166 aa13.27□□□□□ -0.28
LDLR-207ENST00000558013 TFB1MQ8WVM0 346 aaKnown RBP13.27□□□□□ -0.28
LDLR-207ENST00000558013 CENPIQ92674 756 aaPredicted RBP13.27□□□□□ -0.28
LDLR-207ENST00000558013 CCDC106Q9BWC9 280 aa13.27□□□□□ -0.28
LDLR-207ENST00000558013 XPNPEP3Q9NQH7 507 aa13.27□□□□□ -0.28
LDLR-207ENST00000558013 KRT82Q9NSB4 513 aa13.27□□□□□ -0.28
LDLR-207ENST00000558013 ZFATQ9P243 1243 aa13.27□□□□□ -0.28
LDLR-207ENST00000558013 STOML1Q9UBI4 398 aa13.27□□□□□ -0.28
LDLR-207ENST00000558013 SLC7A8Q9UHI5 535 aa13.27□□□□□ -0.28
LDLR-207ENST00000558013 ZNF638Q14966 1978 aaKnown RBP13.27□□□□□ -0.29
LDLR-207ENST00000558013 OTOFQ9HC10 1997 aa13.27□□□□□ -0.29
LDLR-207ENST00000558013 FGF3P11487 239 aaPredicted RBP13.27□□□□□ -0.29
LDLR-207ENST00000558013 GNL1P36915 607 aaPredicted RBP13.27□□□□□ -0.29
LDLR-207ENST00000558013 MXRA7P84157 204 aa13.27□□□□□ -0.29
LDLR-207ENST00000558013 POU5F1BQ06416 359 aa13.27□□□□□ -0.29
LDLR-207ENST00000558013 ADIGQ0VDE8 80 aa13.27□□□□□ -0.29
LDLR-207ENST00000558013 SEMA5AQ13591 1074 aa13.27□□□□□ -0.29
LDLR-207ENST00000558013 ZBTB6Q15916 424 aa13.27□□□□□ -0.29
LDLR-207ENST00000558013 RALGPS1Q5JS13 557 aa13.27□□□□□ -0.29
LDLR-207ENST00000558013 MBLAC2Q68D91 279 aa13.27□□□□□ -0.29
LDLR-207ENST00000558013 PACS1Q6VY07 963 aa13.27□□□□□ -0.29
LDLR-207ENST00000558013 HFE2Q6ZVN8 426 aa13.27□□□□□ -0.29
LDLR-207ENST00000558013 SLC26A9Q7LBE3 791 aa13.27□□□□□ -0.29
LDLR-207ENST00000558013 ANKRD13AQ8IZ07 590 aa13.27□□□□□ -0.29
LDLR-207ENST00000558013 NME8Q8N427 588 aa13.27□□□□□ -0.29
LDLR-207ENST00000558013 TMEM40Q8WWA1 233 aa13.27□□□□□ -0.29
LDLR-207ENST00000558013 LENG1Q96BZ8 264 aaPredicted RBP13.27□□□□□ -0.29
LDLR-207ENST00000558013 SNX27Q96L92 541 aa13.27□□□□□ -0.29
LDLR-207ENST00000558013 ANLNQ9NQW6 1124 aa13.27□□□□□ -0.29
LDLR-207ENST00000558013 TMEM216Q9P0N5 145 aa13.27□□□□□ -0.29
LDLR-207ENST00000558013 PLA2G4CQ9UP65 541 aa13.27□□□□□ -0.29
LDLR-207ENST00000558013 E7ENQ6 273 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 HNRNPCL1O60812 293 aaKnown RBP13.26□□□□□ -0.29
LDLR-207ENST00000558013 ZMPSTE24O75844 475 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 VHLP40337 213 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 SLC34A1Q06495 639 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 HIC1Q14526 733 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 DLG2Q15700 870 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 TEDDM1Q5T9Z0 273 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 OTUD1Q5VV17 481 aaPredicted RBP13.26□□□□□ -0.29
LDLR-207ENST00000558013 RIPOR1Q6ZS17 1223 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 ULK2Q8IYT8 1036 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 PHC3Q8NDX5 983 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 PPTC7Q8NI37 304 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 STMN2Q93045 179 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 FCRL3Q96P31 734 aaPredicted RBP13.26□□□□□ -0.29
LDLR-207ENST00000558013 TTC1Q99614 292 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 PRDM12Q9H4Q4 367 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 A0A0A0MRY4 1105 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 ENO4A6NNW6 628 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 GOLGA8TH3BQL2 631 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 I6L893 689 aaPredicted RBP13.26□□□□□ -0.29
LDLR-207ENST00000558013 CXCL11O14625 94 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 DGKIO75912 1065 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 SNAI1O95863 264 aaPredicted RBP13.26□□□□□ -0.29
LDLR-207ENST00000558013 SMPD1P17405 629 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 TPSB2P20231 275 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 PTPN9P43378 593 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 TPSAB1Q15661 275 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 TMEM154Q6P9G4 183 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 PIGZQ86VD9 579 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 ANKRD52Q8NB46 1076 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 GSTCDQ8NEC7 633 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 ACVR1CQ8NER5 493 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 FAM136AQ96C01 138 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 LRRC39Q96DD0 335 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 PGBD4Q96DM1 585 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 CDCA5Q96FF9 252 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 SPATA13Q96N96 652 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 OLFM3Q96PB7 478 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 APOL2Q9BQE5 337 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 WWP1Q9H0M0 922 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 MAN1C1Q9NR34 630 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 LOC100653049A0A140TA62 436 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 KRT34O76011 436 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms