RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 IDH3AP50213 366 aa12.71□□□□□ -0.38
LDLR-205ENST00000557933 LAMTOR4Q0VGL1 99 aa12.71□□□□□ -0.38
LDLR-205ENST00000557933 TTLL12Q14166 644 aaPredicted RBP12.71□□□□□ -0.38
LDLR-205ENST00000557933 NRF1Q16656 503 aa12.71□□□□□ -0.38
LDLR-205ENST00000557933 TBC1D25Q3MII6 688 aa12.71□□□□□ -0.38
LDLR-205ENST00000557933 ARPINQ7Z6K5 226 aa12.71□□□□□ -0.38
LDLR-205ENST00000557933 PPP2R3CQ969Q6 453 aa12.71□□□□□ -0.38
LDLR-205ENST00000557933 TRAPPC9Q96Q05 1148 aa12.71□□□□□ -0.38
LDLR-205ENST00000557933 PRPF18Q99633 342 aaKnown RBP12.71□□□□□ -0.38
LDLR-205ENST00000557933 UBAP1Q9NZ09 502 aa12.71□□□□□ -0.38
LDLR-205ENST00000557933 TSPAN16Q9UKR8 245 aa12.71□□□□□ -0.38
LDLR-205ENST00000557933 KCNK1O00180 336 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 APOL1O14791 398 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 MAGEB3O15480 346 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 FAM189A1O60320 539 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 CSPG5O95196 566 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 LDHAP00338 332 aaKnown RBP12.7□□□□□ -0.38
LDLR-205ENST00000557933 MT-CO1P00395 513 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 TNNC2P02585 160 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 ITGAXP20702 1163 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 UBA1P22314 1058 aaKnown RBP12.7□□□□□ -0.38
LDLR-205ENST00000557933 NDST1P52848 882 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 TUBB3Q13509 450 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 HSDL1Q3SXM5 330 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 LRRC23Q53EV4 343 aaPredicted RBP12.7□□□□□ -0.38
LDLR-205ENST00000557933 WDR78Q5VTH9 848 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 MBLAC2Q68D91 279 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 NXNQ6DKJ4 435 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 PMF1Q6P1K2 205 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 NAPRTQ6XQN6 538 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 ACOT1Q86TX2 421 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 WDR49Q8IV35 697 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 CCNYQ8ND76 341 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 CEP70Q8NHQ1 597 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 GRIN3AQ8TCU5 1115 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 GPRASP2Q96D09 838 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 SIGLEC10Q96LC7 697 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 TEPSINQ96N21 525 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 AGAP2Q99490 1192 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 CENPKQ9BS16 269 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 UBP1Q9NZI7 540 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 PHIPQ8WWQ0 1821 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 NOP56O00567 594 aaKnown RBP12.7□□□□□ -0.38
LDLR-205ENST00000557933 ABLIM1O14639 778 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 LTFP02788 710 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 PGK2P07205 417 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 ENO3P13929 434 aaPredicted RBP12.7□□□□□ -0.38
LDLR-205ENST00000557933 GPD1P21695 349 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 TYK2P29597 1187 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 AVPR1AP37288 418 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 STAT5BP51692 787 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 PCLAFQ15004 111 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 SLC5A9Q2M3M2 681 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 CCDC14Q49A88 953 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 DNAL1Q4LDG9 190 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 GLRA4Q5JXX5 417 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 JADE1Q6IE81 842 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 NIPA2Q8N8Q9 360 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 NAT14Q8WUY8 206 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 LENG8Q96PV6 779 aaPredicted RBP12.7□□□□□ -0.38
LDLR-205ENST00000557933 WRNIP1Q96S55 665 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 XPNPEP3Q9NQH7 507 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 THAP1Q9NVV9 213 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 ZNF214Q9UL59 606 aaPredicted RBP12.7□□□□□ -0.38
LDLR-205ENST00000557933 STYXL1Q9Y6J8 313 aa12.7□□□□□ -0.38
LDLR-205ENST00000557933 PPEF2O14830 753 aa12.69□□□□□ -0.38
LDLR-205ENST00000557933 PAPSS1O43252 624 aaPredicted RBP12.69□□□□□ -0.38
LDLR-205ENST00000557933 FOXD2O60548 495 aaPredicted RBP12.69□□□□□ -0.38
LDLR-205ENST00000557933 JUNP05412 331 aaKnown RBP12.69□□□□□ -0.38
LDLR-205ENST00000557933 VAV1P15498 845 aa12.69□□□□□ -0.38
LDLR-205ENST00000557933 GPD2P43304 727 aa12.69□□□□□ -0.38
LDLR-205ENST00000557933 FAM131BQ86XD5 332 aa12.69□□□□□ -0.38
LDLR-205ENST00000557933 PPP4R1Q8TF05 950 aa12.69□□□□□ -0.38
LDLR-205ENST00000557933 HIC2Q96JB3 615 aa12.69□□□□□ -0.38
LDLR-205ENST00000557933 ACO2Q99798 780 aaKnown RBP12.69□□□□□ -0.38
LDLR-205ENST00000557933 PCDH18Q9HCL0 1135 aa12.69□□□□□ -0.38
LDLR-205ENST00000557933 PICK1Q9NRD5 415 aa12.69□□□□□ -0.38
LDLR-205ENST00000557933 ASNSD1Q9NWL6 643 aa12.69□□□□□ -0.38
LDLR-205ENST00000557933 RPL26L1Q9UNX3 145 aaKnown RBP12.69□□□□□ -0.38
LDLR-205ENST00000557933 ANKRD33BA6NCL7 494 aa12.69□□□□□ -0.38
LDLR-205ENST00000557933 LACTBL1A8MY62 500 aa12.69□□□□□ -0.38
LDLR-205ENST00000557933 GPR25O00155 361 aa12.69□□□□□ -0.38
LDLR-205ENST00000557933 OGTO15294 1046 aa12.69□□□□□ -0.38
LDLR-205ENST00000557933 SNNO75324 88 aaPredicted RBP12.69□□□□□ -0.38
LDLR-205ENST00000557933 LCP1P13796 627 aa12.69□□□□□ -0.38
LDLR-205ENST00000557933 CYP2F1P24903 491 aa12.69□□□□□ -0.38
LDLR-205ENST00000557933 PCSK6P29122 969 aa12.69□□□□□ -0.38
LDLR-205ENST00000557933 PITX1P78337 314 aaPredicted RBP12.69□□□□□ -0.38
LDLR-205ENST00000557933 CMPK2Q5EBM0 449 aa12.69□□□□□ -0.38
LDLR-205ENST00000557933 RPS27LQ71UM5 84 aaKnown RBP12.69□□□□□ -0.38
LDLR-205ENST00000557933 SDCCAG8Q86SQ7 713 aaPredicted RBP12.69□□□□□ -0.38
LDLR-205ENST00000557933 GSDMBQ8TAX9 411 aa12.69□□□□□ -0.38
LDLR-205ENST00000557933 ANKRD36BP1Q96IX9 119 aa12.69□□□□□ -0.38
LDLR-205ENST00000557933 SORT1Q99523 831 aa12.69□□□□□ -0.38
LDLR-205ENST00000557933 MRPL4Q9BYD3 311 aaKnown RBP12.69□□□□□ -0.38
LDLR-205ENST00000557933 COG4Q9H9E3 785 aa12.69□□□□□ -0.38
LDLR-205ENST00000557933 LMCD1Q9NZU5 365 aa12.69□□□□□ -0.38
LDLR-205ENST00000557933 PAK5Q9P286 719 aa12.69□□□□□ -0.38
LDLR-205ENST00000557933 UQCRBP14927 111 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 TPH1P17752 444 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms