RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 DPYSL2Q16555 572 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 ANKRD20A4Q4UJ75 823 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 SH3PXD2AQ5TCZ1 1133 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 PDPK2PQ6A1A2 396 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 SCYL2Q6P3W7 929 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 PACS1Q6VY07 963 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 ZCCHC23Q6ZST2 131 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 FBXW8Q8N3Y1 598 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 GDPD5Q8WTR4 605 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 SREK1Q8WXA9 508 aaKnown RBP16.76■□□□□ 0.27
SHMT2-232ENST00000557487 STON2Q8WXE9 905 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 DDX50Q9BQ39 737 aaKnown RBP16.76■□□□□ 0.27
SHMT2-232ENST00000557487 ADAM28Q9UKQ2 775 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 ARHGAP26Q9UNA1 814 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 SF3B1O75533 1304 aaKnown RBP eCLIP16.76■□□□□ 0.275e-8■■■■■ 37.4
SHMT2-232ENST00000557487 LGR5O75473 907 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 PROCP04070 461 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 CXCL8P10145 99 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 PGAM1P18669 254 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 CYP2F1P24903 491 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 ABCE1P61221 599 aaKnown RBP16.76■□□□□ 0.27
SHMT2-232ENST00000557487 SLC6A3Q01959 620 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 MAP7Q14244 749 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 PCLAFQ15004 111 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 TMEM132AQ24JP5 1023 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 LRRC8BQ6P9F7 803 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 PLPPR4Q7Z2D5 763 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 SULF1Q8IWU6 871 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 CATSPER1Q8NEC5 780 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 CXorf38Q8TB03 319 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 FERMT1Q9BQL6 677 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 RTKNQ9BST9 563 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 NGRNQ9NPE2 291 aaKnown RBP16.76■□□□□ 0.27
SHMT2-232ENST00000557487 XPNPEP3Q9NQH7 507 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 PRMT7Q9NVM4 692 aaPredicted RBP16.76■□□□□ 0.27
SHMT2-232ENST00000557487 HMGXB4Q9UGU5 601 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 PRPF19Q9UMS4 504 aaKnown RBP16.76■□□□□ 0.27
SHMT2-232ENST00000557487 POMPQ9Y244 141 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 ANK1P16157 1881 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 MEI4A8MW99 385 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 ITM2AO43736 263 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 ATP9BO43861 1147 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 OPHN1O60890 802 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 ALDOAP04075 364 aaKnown RBP16.75■□□□□ 0.27
SHMT2-232ENST00000557487 ITGB3P05106 788 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 NFICP08651 508 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 SCNN1AP37088 669 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 PTPN9P43378 593 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 CHN2P52757 468 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 HK2P52789 917 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 HMGCS2P54868 508 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 RPL10AP62906 217 aaKnown RBP16.75■□□□□ 0.27
SHMT2-232ENST00000557487 POU5F1BQ06416 359 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 LAMB3Q13751 1172 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 PDE1CQ14123 709 aaPredicted RBP16.75■□□□□ 0.27
SHMT2-232ENST00000557487 CDO1Q16878 200 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 MMEL1Q495T6 779 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 HEATR6Q6AI08 1181 aaKnown RBP16.75■□□□□ 0.27
SHMT2-232ENST00000557487 OLFML1Q6UWY5 402 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 ARHGAP22Q7Z5H3 698 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 NT5DC4Q86YG4 428 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 SLC25A41Q8N5S1 370 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 ICA1LQ8NDH6 482 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 UBA3Q8TBC4 463 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 PYDC1Q8WXC3 89 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 SERPINI1Q99574 410 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 NT5C1AQ9BXI3 368 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 SLC4A5Q9BY07 1137 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 CREBZFQ9NS37 354 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 COPG2Q9UBF2 871 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 TSPAN16Q9UKR8 245 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 LCTP09848 1927 aa16.75■□□□□ 0.27
SHMT2-232ENST00000557487 A0A0A0MRY4 1105 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 A6NJR5 290 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 TMEM114B3SHH9 223 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 TPP1O14773 563 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 SLC22A2O15244 555 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 STK10O94804 968 aaKnown RBP16.74■□□□□ 0.27
SHMT2-232ENST00000557487 SLC26A2P50443 739 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 MTTPP55157 894 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 FAM187BQ17R55 369 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 SFT2D3Q587I9 215 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 OGFRL1Q5TC84 451 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-232ENST00000557487 TMEM110Q86TL2 294 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 KBTBD6Q86V97 674 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 APOBEC3FQ8IUX4 373 aaKnown RBP16.74■□□□□ 0.27
SHMT2-232ENST00000557487 MPP5Q8N3R9 675 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 NAT14Q8WUY8 206 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 ISL2Q96A47 359 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 HPDLQ96IR7 371 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 SPATA13Q96N96 652 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 SORT1Q99523 831 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 PLK2Q9NYY3 685 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 PCDHB12Q9Y5F1 795 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 TMEM88BA6NKF7 163 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 SPDYE16A6NNV3 312 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-232ENST00000557487 LACTBL1A8MY62 500 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 INO80B-WBP1J3KQ70 363 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 ZNF195O14628 629 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 DENRO43583 198 aaKnown RBP16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms