RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 SIRT4Q9Y6E7 314 aaPredicted RBP4.4□□□□□ -1.71
SCFD1-216ENST00000555550 FAM234BA2RU67 622 aa4.39□□□□□ -1.71
SCFD1-216ENST00000555550 C2CD4BA6NLJ0 364 aa4.39□□□□□ -1.71
SCFD1-216ENST00000555550 KCNQ3O43525 872 aa4.39□□□□□ -1.71
SCFD1-216ENST00000555550 ALADP13716 330 aa4.39□□□□□ -1.71
SCFD1-216ENST00000555550 EGR1P18146 543 aa4.39□□□□□ -1.71
SCFD1-216ENST00000555550 TNFSF4P23510 183 aa4.39□□□□□ -1.71
SCFD1-216ENST00000555550 GABRB3P28472 473 aa4.39□□□□□ -1.71
SCFD1-216ENST00000555550 SLC8A1P32418 973 aa4.39□□□□□ -1.71
SCFD1-216ENST00000555550 SLC12A2P55011 1212 aa4.39□□□□□ -1.71
SCFD1-216ENST00000555550 ATP1A4Q13733 1029 aa4.39□□□□□ -1.71
SCFD1-216ENST00000555550 CBFBQ13951 182 aa4.39□□□□□ -1.71
SCFD1-216ENST00000555550 SLC5A9Q2M3M2 681 aa4.39□□□□□ -1.71
SCFD1-216ENST00000555550 FAM209BQ5JX69 171 aa4.39□□□□□ -1.71
SCFD1-216ENST00000555550 DGKKQ5KSL6 1271 aa4.39□□□□□ -1.71
SCFD1-216ENST00000555550 CCDC144NLQ6NUI1 221 aa4.39□□□□□ -1.71
SCFD1-216ENST00000555550 TFAP2DQ7Z6R9 452 aa4.39□□□□□ -1.71
SCFD1-216ENST00000555550 ADGRF4Q8IZF3 695 aa4.39□□□□□ -1.71
SCFD1-216ENST00000555550 CLASRPQ8N2M8 674 aaKnown RBP4.39□□□□□ -1.71
SCFD1-216ENST00000555550 PJA1Q8NG27 643 aa4.39□□□□□ -1.71
SCFD1-216ENST00000555550 PARD3BQ8TEW8 1205 aa4.39□□□□□ -1.71
SCFD1-216ENST00000555550 ZNF566Q969W8 418 aa4.39□□□□□ -1.71
SCFD1-216ENST00000555550 NAA15Q9BXJ9 866 aaKnown RBP4.39□□□□□ -1.71
SCFD1-216ENST00000555550 TRIM2Q9C040 744 aa4.39□□□□□ -1.71
SCFD1-216ENST00000555550 TMEM45AQ9NWC5 275 aa4.39□□□□□ -1.71
SCFD1-216ENST00000555550 RGL1Q9NZL6 768 aa4.39□□□□□ -1.71
SCFD1-216ENST00000555550 SEMA5BQ9P283 1151 aa4.39□□□□□ -1.71
SCFD1-216ENST00000555550 SLC22A23A1A5C7 686 aa4.38□□□□□ -1.71
SCFD1-216ENST00000555550 C16orf96A6NNT2 1141 aa4.38□□□□□ -1.71
SCFD1-216ENST00000555550 PODXLO00592 558 aa4.38□□□□□ -1.71
SCFD1-216ENST00000555550 NCK2O43639 380 aa4.38□□□□□ -1.71
SCFD1-216ENST00000555550 CBFA2T3O75081 653 aa4.38□□□□□ -1.71
SCFD1-216ENST00000555550 RPS6KB1P23443 525 aa4.38□□□□□ -1.71
SCFD1-216ENST00000555550 NDUFS1P28331 727 aa4.38□□□□□ -1.71
SCFD1-216ENST00000555550 NSUN2Q08J23 767 aaKnown RBP eCLIP4.38□□□□□ -1.71
SCFD1-216ENST00000555550 GAB1Q13480 694 aa4.38□□□□□ -1.71
SCFD1-216ENST00000555550 HLTFQ14527 1009 aaKnown RBP eCLIP4.38□□□□□ -1.71
SCFD1-216ENST00000555550 ASIC2Q16515 512 aa4.38□□□□□ -1.71
SCFD1-216ENST00000555550 PRTGQ2VWP7 1150 aa4.38□□□□□ -1.71
SCFD1-216ENST00000555550 HSP90AB2PQ58FF8 381 aa4.38□□□□□ -1.71
SCFD1-216ENST00000555550 EARS2Q5JPH6 523 aaKnown RBP4.38□□□□□ -1.71
SCFD1-216ENST00000555550 FAM90A2PQ658T7 463 aa4.38□□□□□ -1.71
SCFD1-216ENST00000555550 DHRS13Q6UX07 377 aa4.38□□□□□ -1.71
SCFD1-216ENST00000555550 RBM44Q6ZP01 1051 aaKnown RBP4.38□□□□□ -1.71
SCFD1-216ENST00000555550 FAM57BQ71RH2 274 aa4.38□□□□□ -1.71
SCFD1-216ENST00000555550 UBE2Q1Q7Z7E8 422 aa4.38□□□□□ -1.71
SCFD1-216ENST00000555550 DPP9Q86TI2 863 aa4.38□□□□□ -1.71
SCFD1-216ENST00000555550 SKAP1Q86WV1 359 aa4.38□□□□□ -1.71
SCFD1-216ENST00000555550 RASGRP3Q8IV61 690 aa4.38□□□□□ -1.71
SCFD1-216ENST00000555550 GLIS1Q8NBF1 620 aa4.38□□□□□ -1.71
SCFD1-216ENST00000555550 OR52L2PQ8NGH6 319 aa4.38□□□□□ -1.71
SCFD1-216ENST00000555550 OVCA2Q8WZ82 227 aa4.38□□□□□ -1.71
SCFD1-216ENST00000555550 KAT2BQ92831 832 aa4.38□□□□□ -1.71
SCFD1-216ENST00000555550 CELF1Q92879 486 aaKnown RBP4.38□□□□□ -1.71
SCFD1-216ENST00000555550 RIPOR3Q96MK2 946 aa4.38□□□□□ -1.71
SCFD1-216ENST00000555550 TTLL2Q9BWV7 592 aa4.38□□□□□ -1.71
SCFD1-216ENST00000555550 AGO4Q9HCK5 861 aaKnown RBP4.38□□□□□ -1.71
SCFD1-216ENST00000555550 IPO11Q9UI26 975 aaKnown RBP4.38□□□□□ -1.71
SCFD1-216ENST00000555550 TTBK1Q5TCY1 1321 aaPredicted RBP4.38□□□□□ -1.71
SCFD1-216ENST00000555550 J3KTA2 159 aa4.37□□□□□ -1.71
SCFD1-216ENST00000555550 PRYO14603 147 aa4.37□□□□□ -1.71
SCFD1-216ENST00000555550 UGDHO60701 494 aa4.37□□□□□ -1.71
SCFD1-216ENST00000555550 KRT18P05783 430 aaKnown RBP4.37□□□□□ -1.71
SCFD1-216ENST00000555550 HOXA7P31268 230 aaPredicted RBP4.37□□□□□ -1.71
SCFD1-216ENST00000555550 HOXD12P35452 270 aa4.37□□□□□ -1.71
SCFD1-216ENST00000555550 IDUAP35475 653 aa4.37□□□□□ -1.71
SCFD1-216ENST00000555550 MAPKAPK3Q16644 382 aa4.37□□□□□ -1.71
SCFD1-216ENST00000555550 SLC35G1Q2M3R5 365 aa4.37□□□□□ -1.71
SCFD1-216ENST00000555550 ANXA2RQ3ZCQ2 193 aa4.37□□□□□ -1.71
SCFD1-216ENST00000555550 GLE1Q53GS7 698 aaKnown RBP4.37□□□□□ -1.71
SCFD1-216ENST00000555550 ACSM6Q6P461 480 aa4.37□□□□□ -1.71
SCFD1-216ENST00000555550 KYAT3Q6YP21 454 aaKnown RBP4.37□□□□□ -1.71
SCFD1-216ENST00000555550 C11orf96Q7Z7L8 435 aa4.37□□□□□ -1.71
SCFD1-216ENST00000555550 TMEM204Q9BSN7 226 aa4.37□□□□□ -1.71
SCFD1-216ENST00000555550 TUBB6Q9BUF5 446 aa4.37□□□□□ -1.71
SCFD1-216ENST00000555550 CERS4Q9HA82 394 aa4.37□□□□□ -1.71
SCFD1-216ENST00000555550 MLXIPLQ9NP71 852 aa4.37□□□□□ -1.71
SCFD1-216ENST00000555550 FBXO28Q9NVF7 368 aa4.37□□□□□ -1.71
SCFD1-216ENST00000555550 PNMA6EA0A0J9YXQ4 647 aa4.36□□□□□ -1.71
SCFD1-216ENST00000555550 F8W810 466 aa4.36□□□□□ -1.71
SCFD1-216ENST00000555550 CAND2O75155 1236 aa4.36□□□□□ -1.71
SCFD1-216ENST00000555550 FGF18O76093 207 aa4.36□□□□□ -1.71
SCFD1-216ENST00000555550 TFEBP19484 476 aa4.36□□□□□ -1.71
SCFD1-216ENST00000555550 EEF1GP26641 437 aaKnown RBP4.36□□□□□ -1.71
SCFD1-216ENST00000555550 CDC25AP30304 524 aa4.36□□□□□ -1.71
SCFD1-216ENST00000555550 GNALP38405 381 aa4.36□□□□□ -1.71
SCFD1-216ENST00000555550 IL6STP40189 918 aaPredicted RBP4.36□□□□□ -1.71
SCFD1-216ENST00000555550 STAT6P42226 847 aa4.36□□□□□ -1.71
SCFD1-216ENST00000555550 AGTR2P50052 363 aa4.36□□□□□ -1.71
SCFD1-216ENST00000555550 CSHL1Q14406 222 aa4.36□□□□□ -1.71
SCFD1-216ENST00000555550 INPP5JQ15735 1006 aaPredicted RBP4.36□□□□□ -1.71
SCFD1-216ENST00000555550 CCDC181Q5TID7 509 aa4.36□□□□□ -1.71
SCFD1-216ENST00000555550 PIK3AP1Q6ZUJ8 805 aa4.36□□□□□ -1.71
SCFD1-216ENST00000555550 B4GALNT4Q76KP1 1039 aa4.36□□□□□ -1.71
SCFD1-216ENST00000555550 BCAS4Q8TDM0 211 aa4.36□□□□□ -1.71
SCFD1-216ENST00000555550 GLMPQ8WWB7 406 aa4.36□□□□□ -1.71
SCFD1-216ENST00000555550 BRI3BPQ8WY22 251 aa4.36□□□□□ -1.71
SCFD1-216ENST00000555550 DNASE2BQ8WZ79 361 aa4.36□□□□□ -1.71
SCFD1-216ENST00000555550 NUDT22Q9BRQ3 303 aa4.36□□□□□ -1.71
SCFD1-216ENST00000555550 CDCP1Q9H5V8 836 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms