RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 CEP83Q9Y592 693 aa12.3□□□□□ -0.44
VRK1-204ENST00000555351 THADAQ6YHU6 1953 aa12.3□□□□□ -0.44
VRK1-204ENST00000555351 NUP205Q92621 2012 aa12.3□□□□□ -0.44
VRK1-204ENST00000555351 IGHV1OR15-9A0A0B4J2B8 117 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 FOXN3O00409 490 aaPredicted RBP12.29□□□□□ -0.44
VRK1-204ENST00000555351 GDF9O60383 454 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 SYNCRIPO60506 623 aaKnown RBP12.29□□□□□ -0.44
VRK1-204ENST00000555351 HSF2BPO75031 334 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 APOEP02649 317 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 ATP5BP06576 529 aaKnown RBP12.29□□□□□ -0.44
VRK1-204ENST00000555351 CDH5P33151 784 aaPredicted RBP12.29□□□□□ -0.44
VRK1-204ENST00000555351 CLCN1P35523 988 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 SCNN1AP37088 669 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 IL12RB1P42701 662 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 WASP42768 502 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 DHPSP49366 369 aaPredicted RBP12.29□□□□□ -0.44
VRK1-204ENST00000555351 ARID5AQ03989 594 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 FUT11Q495W5 492 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 STPG1Q5TH74 334 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 KLHDC7AQ5VTJ3 777 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 CDKAL1Q5VV42 579 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 SYPL2Q5VXT5 272 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 LYSMD4Q5XG99 296 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 TMEM215Q68D42 235 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 IL31Q6EBC2 164 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 KIAA1211LQ6NV74 962 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 C11orf57Q6ZUT1 292 aaPredicted RBP12.29□□□□□ -0.44
VRK1-204ENST00000555351 SLC26A9Q7LBE3 791 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 C1orf131Q8NDD1 294 aaKnown RBP12.29□□□□□ -0.44
VRK1-204ENST00000555351 ZNF397Q8NF99 534 aaPredicted RBP12.29□□□□□ -0.44
VRK1-204ENST00000555351 CEP76Q8TAP6 659 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 RLN3Q8WXF3 142 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 SLC2A13Q96QE2 648 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 NAA15Q9BXJ9 866 aaKnown RBP12.29□□□□□ -0.44
VRK1-204ENST00000555351 CIPCQ9C0C6 399 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 TMEM245Q9H330 911 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 PRDM16Q9HAZ2 1276 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 ACP6Q9NPH0 428 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 ITM2CQ9NQX7 267 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 SAMSN1Q9NSI8 373 aaKnown RBP12.29□□□□□ -0.44
VRK1-204ENST00000555351 RRN3Q9NYV6 651 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 USP36Q9P275 1121 aaKnown RBP12.29□□□□□ -0.44
VRK1-204ENST00000555351 SLC12A6Q9UHW9 1150 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 GGA2Q9UJY4 613 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 CLEC4EQ9ULY5 219 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 PLA2G4CQ9UP65 541 aa12.29□□□□□ -0.44
VRK1-204ENST00000555351 CKAP5Q14008 2032 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 MUC22E2RYF6 1773 aaPredicted RBP12.28□□□□□ -0.44
VRK1-204ENST00000555351 WASH3PC4AMC7 463 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 TSPAN3O60637 253 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 TRUB2O95900 331 aaKnown RBP12.28□□□□□ -0.44
VRK1-204ENST00000555351 MBD3O95983 291 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 ASLP04424 464 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 TPM2P07951 284 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 DLDP09622 509 aaKnown RBP12.28□□□□□ -0.44
VRK1-204ENST00000555351 PABPC1P11940 636 aaKnown RBP12.28□□□□□ -0.44
VRK1-204ENST00000555351 UCHL3P15374 230 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 OXTRP30559 389 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 SLC6A4P31645 630 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 CDK17Q00537 523 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 APBA1Q02410 837 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 RPL6Q02878 288 aaKnown RBP12.28□□□□□ -0.44
VRK1-204ENST00000555351 ZBTB16Q05516 673 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 KCNMA1Q12791 1236 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 LMAN2Q12907 356 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 CAMK2GQ13555 558 aaPredicted RBP12.28□□□□□ -0.44
VRK1-204ENST00000555351 SLC12A1Q13621 1099 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 ARID5BQ14865 1188 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 MS4A13Q5J8X5 152 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 TTC39BQ5VTQ0 682 aaPredicted RBP12.28□□□□□ -0.44
VRK1-204ENST00000555351 NADSYN1Q6IA69 706 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 SLC23A3Q6PIS1 610 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 SERPINA13PQ6UXR4 307 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 CHST9Q7L1S5 443 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 TAC4Q86UU9 113 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 ADIPOR2Q86V24 386 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 CCDC117Q8IWD4 279 aaPredicted RBP12.28□□□□□ -0.44
VRK1-204ENST00000555351 ATP6V0D2Q8N8Y2 350 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 TMEM35BQ8NCS4 154 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 FOXJ1Q92949 421 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 TTC17Q96AE7 1141 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 ZNF419Q96HQ0 510 aaPredicted RBP12.28□□□□□ -0.44
VRK1-204ENST00000555351 LMLNQ96KR4 655 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 CPXM1Q96SM3 734 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 STK33Q9BYT3 514 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 PCED1AQ9H1Q7 454 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 ABCB8Q9NUT2 735 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 PILRBQ9UKJ0 227 aa12.28□□□□□ -0.44
VRK1-204ENST00000555351 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.27□□□□□ -0.45
VRK1-204ENST00000555351 LNP1A1A4G5 178 aa12.27□□□□□ -0.45
VRK1-204ENST00000555351 KCNU1A8MYU2 1149 aa12.27□□□□□ -0.45
VRK1-204ENST00000555351 TBL1XO60907 577 aa12.27□□□□□ -0.45
VRK1-204ENST00000555351 LSM8O95777 96 aaKnown RBP12.27□□□□□ -0.45
VRK1-204ENST00000555351 POLR2EP19388 210 aaKnown RBP12.27□□□□□ -0.45
VRK1-204ENST00000555351 CCR1P32246 355 aa12.27□□□□□ -0.45
VRK1-204ENST00000555351 PTGER3P43115 390 aa12.27□□□□□ -0.45
VRK1-204ENST00000555351 GABRB2P47870 512 aa12.27□□□□□ -0.45
VRK1-204ENST00000555351 OXCT1P55809 520 aa12.27□□□□□ -0.45
VRK1-204ENST00000555351 SLC6A3Q01959 620 aa12.27□□□□□ -0.45
VRK1-204ENST00000555351 DRAP1Q14919 205 aaPredicted RBP12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms